Halioglobus japonicus: BST95_04235
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Entry
BST95_04235 CDS
T04687
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hja
Halioglobus japonicus
Pathway
hja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BST95_04235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hja03019
]
BST95_04235
03009 Ribosome biogenesis [BR:
hja03009
]
BST95_04235
Enzymes [BR:
hja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BST95_04235
Messenger RNA biogenesis [BR:
hja03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BST95_04235
Ribosome biogenesis [BR:
hja03009
]
Prokaryotic type
rRNA helicases
BST95_04235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
THB
Motif
Other DBs
NCBI-ProteinID:
AQA17557
UniProt:
A0AAP8MCW3
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All DBs
Position
877936..879690
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AA seq
584 aa
AA seq
DB search
MSTQAAVTSFSELALPEFLQKALADVGYETPSAIQAATIPALLEGRDVLGQAQTGTGKTA
AFALPALATLGPVGKSPQVLVLTPTRELAIQVAEAFQKYATYMDDFHVLPIYGGTDYRGQ
LRQLKRGVQVVVGTPGRVMDHMRRGSLDLSGLKTLVLDEADEMLRMGFIDDVEWILEQTP
EERQVALFSATMPEAIHRIATAHLNDPVEVAIEVQTVTNQSIRQRVWMMAGVHKLDALTR
ILEVEDFDAVIIFVRTRLATTELAEKLAARGYASAALNGDIPQKQRETTIEKLKSGKFDI
LVATDVAARGLDVERISHVVNYDIPYDVEAYVHRIGRTGRAGREGDAILFAANRERRLLR
AIEKSTGQTIEKMELPSAEEVTDKRIGKFKQRISESLDTAELDVFRKLVQDYQTEYGVPV
LEVAAALAAMVQGKKPLVAKPPAEKKQDKDKQKAKRAAKTSRDDGYDPREAKEKGQVASP
EKGMERFRIEVGHTHKVKPGNIVGAIANEAEIDAEYIGRIEIYDDHSTVDLPEGMPKELF
KHLKTVWVSGQRLQISRITEGEGKPRKKQGNKPKHRRKGKPPGK
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgtctacgcaagcggcggtaaccagcttttcagagctggcccttcccgaattcctgcaa
aaagctctggccgacgttggctacgagacgccttccgctattcaggcggcgactattccc
gcgctgctggaaggacgcgacgtgctgggtcaggcccagacaggcacgggtaaaacggct
gcgtttgcgctgcctgcgcttgccacgctggggccggtgggtaagtcgccccaggtgctg
gtgttaacgcctacccgtgaactggctatccaggtcgccgaggctttccagaagtacgct
acgtatatggacgatttccatgtgctgcccatttatggcggtactgactatcgcggccag
ttgcgccagctcaagcgcggtgtacaggtggtggtggggacaccgggccgtgtcatggat
cacatgcgccgcggttccctggatttgtccggcctgaaaactctggtgctggatgaagct
gacgagatgctgcgcatgggtttcattgacgacgtagaatggattcttgagcagaccccc
gaggagcgtcaggtggcgctgttctccgcgactatgcccgaggccattcatcgcattgcc
accgcacacctgaacgacccggttgaagtcgccattgaagtgcagacggtcaccaaccag
tcaatccgccagcgcgtgtggatgatggccggcgtccacaagctcgatgcgctcacccgg
atccttgaggtggaggatttcgacgcggtgattatcttcgtgcggacgcgtctagctacc
accgagctcgccgagaagctggctgcccgcgggtacgcctcggcggccctcaatggtgac
attccgcagaagcagcgtgagacgacgattgagaaattgaagagcggcaagttcgacatt
cttgtggcaaccgatgtcgcggctcgagggctggatgtggagcgcatcagccacgtggtc
aactacgacattccctacgatgtagaagcctacgtgcaccgcattggtcgcaccgggcgt
gccggtcgggaaggtgacgccatcctgtttgcggctaaccgcgagcgacgcctgttacgt
gcgattgagaagtccactgggcagaccattgaaaagatggagctgccctctgccgaagag
gtcaccgacaagcgtatcggcaagttcaagcagcgtatttcagaatcgctcgataccgcc
gaactcgatgtgtttcgtaagttggtacaggactaccagaccgagtacggtgtgccggta
ctggaagtcgctgcggccctggcggccatggtgcagggcaaaaagcccctggtggccaag
ccccctgcggagaaaaagcaggacaaagacaaacagaaagcaaagcgcgcggccaagact
tcccgggacgacggctacgatcctcgcgaggccaaggagaagggccaggtcgcgtcgcct
gaaaaaggtatggagcgcttccggattgaagtgggccatacgcacaaggtcaagccgggc
aacattgtcggcgctattgccaatgaggcggagattgatgcggagtacattggccgcatt
gaaatctatgacgaccacagtaccgtcgacctgccggaagggatgcccaaggaattgttt
aaacacctcaaaacagtctgggtgagtggtcagcgcctgcagatttcccgtatcacagaa
ggtgagggcaagccgcgcaagaaacagggcaataagcccaagcatcggcgcaagggcaag
ccacccggtaagtga
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