Halioglobus japonicus: BST95_11715
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Entry
BST95_11715 CDS
T04687
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
hja
Halioglobus japonicus
Pathway
hja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BST95_11715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hja03019
]
BST95_11715
03009 Ribosome biogenesis [BR:
hja03009
]
BST95_11715
Enzymes [BR:
hja01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BST95_11715
Messenger RNA biogenesis [BR:
hja03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BST95_11715
Ribosome biogenesis [BR:
hja03009
]
Prokaryotic type
rRNA processing factors
BST95_11715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AQA18806
LinkDB
All DBs
Position
complement(2462569..2465505)
Genome browser
AA seq
978 aa
AA seq
DB search
MKKMLINATQPEELRVALVDGQRLYDLDIENRTRIQKKSNIYKGKITRVEPSLEAAFVDF
GAERHGFLPLKEIAREYFYRKPEGDGRLKIKDVVKEGTQVIVQVDKEERGNKGAALTTFI
SLAGRYMVLMPNNPRAGGISRSIEGDERSELRENMSHLEIPNGMGVIVRTAAVGRSTEEL
QWDLNYLLSLWEKIGEANGEVKAPTLLFQESNVIIRAVRDYLRDDIDQVLIDSPEAFKQA
QDFVGMVMPQYKSRLRQYDDNIPMFNRFQIESQIETAFQREVRLPSGGSIVIDPTEALVS
IDINSARATKGKDIEETALRTNLEAADEIARQLRLRDMGGLVVIDFIDMLASKSQRQVEN
RMREALGIDRARVQVGRISRFGLLEMSRQRLRPSLGETSGKVCPRCNGQGTIRDTKSLAL
SILRLLEEEAIKDRSAEVRAIVPVDVAAYLLNEKRGALNGIEIDTKVRVLVVPNPNLETP
HFEVQRLRDDEVEGHEISYKIDMAEPDMDAITDSHKAAIPVQQAAVQAVTPSAPAPEAAP
REEKPKQQKQPQNRKRGGKQRKPEPKPGLFARIWAAIVGEPEQEQKPAKGKGKSKPQQRQ
GGEQKSGGNGNNRNRNRNRNRNRNWNGDSQQRGDNRNQQNRDGDQQRKSEAGDNQQKRQR
SEEGGNNRNRNRNRRRNNDDRRKQDQAVEANSQDQQQDAAAQGGDRREDAPRKRPSDMKR
GEPRRRRNRSRKADGEQAAGNVQALASLPAVKAEAEAPAPQAEAQPKVAQADTAPVEATQ
AAAPQAEAPKAEQPKTETPAPAPATEATAAPAEEVAEAAPAVAETAEVVEETVERTTEKT
VEKVVKAEPATPAIPPAGITGDGRAINDPRVAAKPVTALAISTNTFALFNDTVAPAAAHS
GRVVPRAANDPRGPLTTATPVAEAAPTEEVAVEEAADSEAPVAEAAAPAPEATSETDAQP
AAVEATAEPKKESEAAQG
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaaatgctgattaacgcaactcaacctgaagagttacgtgtcgcgctggttgac
ggccagcgtctgtacgacctggatatcgaaaatcgcacccgtatccagaaaaaatccaac
atctacaagggcaagatcacccgcgttgaaccctctcttgaagccgcctttgtcgacttc
ggcgccgagcgccacggctttctgccgcttaaggaaatcgcccgcgaatatttttaccgc
aagccggaaggtgacggccgcctcaagatcaaggatgtggtcaaggaaggcactcaagtt
atcgtgcaggtcgataaggaagagcgcggtaacaagggcgcagccctgaccacctttatc
agcctcgctggccgctacatggtgctcatgcccaacaatcctcgcgccggtggtatctcc
cgcagcattgagggcgacgagcgcagcgaactgcgcgagaacatgtcgcacctggaaatt
cccaacggcatgggcgtcatcgtacgcaccgctgccgtcggccgctccaccgaagagctg
cagtgggacctgaactacctgctgtcactgtgggagaaaattggcgaggccaacggcgaa
gtcaaagcccccaccctgttgttccaggaaagcaatgtcatcatccgcgcagtacgcgac
tacctgcgcgacgatatcgaccaggtactcatcgactcccctgaagccttcaaacaggcc
caggacttcgtaggcatggtaatgccgcaatacaagagccgcctgcgccagtacgacgac
aacatccccatgttcaaccgcttccagatcgagagccaaatcgaaaccgccttccagcgt
gaagtgcgcctgccctctggcggctcgattgtcatcgaccccaccgaagcactggtgagc
atcgacatcaactcggcgcgcgctaccaaaggcaaggacattgaggaaaccgccctcagg
accaaccttgaagccgctgacgaaatagcccgccagctacgcctgcgcgacatgggcggc
ctggtggtgattgactttatcgacatgctggcctccaagagccagcgccaggttgagaac
cgcatgcgcgaagcgctgggcattgaccgcgccagagttcaggtgggccgtatttcccgc
ttcggtctgctggaaatgtcacgccagcgtctgcgcccctctctgggtgagaccagtggc
aaagtctgcccccgctgtaacggccagggcaccattcgcgacaccaagtcgctggccctg
tcgattctgcgcctgctcgaagaagaggccatcaaggatcgcagcgccgaggtgcgcgcc
atcgtccctgtcgacgtggctgcctacctgctcaacgagaagcgcggtgctttaaacggt
atcgagatcgacaccaaggtacgggtactggttgtgcccaaccccaacctagagacaccc
cacttcgaagtgcagcgcctgcgcgacgacgaagtcgaaggtcacgagatcagctacaag
atcgacatggctgaacccgacatggatgccatcaccgacagccacaaggcggccatcccc
gtgcaacaggctgccgtccaggcggtaacaccttccgctcctgcgcctgaagccgcgcca
cgcgaagaaaagcccaagcagcagaagcagccccaaaaccgcaagcgcggtggcaagcag
cgtaagcctgagcccaagccaggactcttcgcgcgtatctgggccgccattgttggcgag
cctgagcaggaacaaaaacctgccaagggcaaaggcaagagcaaaccccaacagcgtcag
ggtggcgagcagaaatctggcggtaacggcaacaatcggaatcgcaaccgcaaccgcaac
cgcaaccggaactggaatggcgacagccagcagcgcggcgataaccgcaaccagcaaaat
cgtgatggcgatcagcagcgcaagtcggaagccggtgacaaccagcagaagcgtcagcgc
agcgaagaaggcggcaacaaccgcaatcgcaaccgcaaccgtcgtcgtaacaacgatgat
cgtcgcaagcaggaccaggcggttgaagctaacagccaggatcagcagcaggatgcagca
gcccagggtggcgatcgtcgcgaagatgcaccgcgcaagcgcccatctgatatgaagcgt
ggcgaaccgcgccgtcgccgcaaccgcagccgcaaggccgacggtgaacaggcagcaggc
aacgttcaggcgctggcatcactgcccgccgttaaagccgaagccgaggctccggcaccg
caggcagaagcgcagcccaaagtggctcaggctgacactgcgccagttgaagcaactcaa
gctgcagcacctcaagccgaggcgccgaaggctgaacagcccaagacggagactccggca
ccggctcccgccaccgaagctaccgctgcacccgcagaggaagtcgctgaagctgccccg
gcagttgcagagacagccgaggttgtcgaagaaactgtcgaaagaactaccgaaaagact
gtcgagaaagtcgtcaaggccgagcctgctacacccgcaataccgcccgccggcattact
ggcgatggccgtgcgattaacgacccgcgcgtcgccgccaaaccggtgactgcattggcg
atcagcaccaataccttcgctctgttcaatgacaccgtggcccctgccgccgcgcacagc
gggcgcgtcgtgccccgtgcggccaacgatccccgcggcccactgacaacggcaacaccg
gttgctgaagcagccccgactgaagaagttgccgttgaagaagcggcggacagtgaagcg
cccgttgccgaggctgcagcacctgcaccggaggccacctccgagacagacgcacagcct
gctgcagtggaggcgacagctgaacccaagaaggagtcagaggccgcacagggctaa
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