Halioglobus japonicus: BST95_18420
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Entry
BST95_18420 CDS
T04687
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
hja
Halioglobus japonicus
Pathway
hja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BST95_18420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hja03019
]
BST95_18420
Enzymes [BR:
hja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BST95_18420
Messenger RNA biogenesis [BR:
hja03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BST95_18420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
AQA19927
LinkDB
All DBs
Position
complement(3911979..3913340)
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AA seq
453 aa
AA seq
DB search
MIKSFVGRITGKNNSAGEAVQAPAGQNKSPRKEQAQQASGNKKRRRSRKPKAAPQPWSID
EFVVEPEEGKVRFHDLGLRDELMRGIAELGFQYCSPIQGQVLPHTLKGNDAIGKAQTGTG
KTAAFLITIFNDLLSNHVEGERFIGEPRALVIAPTRELVMQIAADAADLGKHTGLEVVTL
IGGMDYQKQLNRLQNNVVDLVVATPGRLIDFMTRRDLYLDHIEVLVLDEADRMLDMGFIP
QVKRIVRATPRKENRQTLLFSATFTQDIINLSQQWTFEPVTVEIEPESVATDTVDQKIYL
VSSEERYRVLNNVIKSEDCNSLIVFANRRDQVRRLHERLRKSGVKAGILSGEIPQGKRTR
TLEQFKTGEIKVLVATDVAGRGIHVDGISHVVNYNLPEDPEDYVHRIGRTGRAGATGTSI
SFASEDDAFLLPDLEALLGAKLECTYPPAELLV
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
ttgatcaagagttttgtagggcgtattaccggcaagaacaacagtgctggtgaagctgtc
caggcccctgcaggtcagaacaagtcgccgcgcaaagagcaggcgcagcaggccagcggc
aacaagaaacgccgccgttctcgcaagcccaaagctgctccccagccctggagcatcgac
gagtttgtcgttgagccagaagagggcaaggtacgcttccacgacctcggcctgcgcgac
gaactgatgcgcggtattgccgagctcggctttcaatattgctcgcctattcagggccag
gtgttgccgcatacactcaaaggcaatgacgcgattggcaaggcgcagacaggcaccggt
aaaacggccgcattcctcattaccatcttcaatgatttgctgagcaaccatgttgagggt
gagcgctttattggcgagccgcgcgcgctggtgattgcgcccacccgtgagctggtcatg
cagatcgctgcggatgccgccgacctcggcaagcacaccgggctggaagtggtcaccctg
attggcggtatggattaccagaagcagctcaaccgcttgcagaacaacgtggttgatctg
gttgtggctacgccgggccgcctgatcgatttcatgactcgccgcgatctctatctcgat
cacatcgaggtactggtgctcgacgaggcggaccggatgctcgacatgggctttatcccg
caggtgaagcgtattgtccgtgccacgcctcgcaaggaaaaccgtcaaacgctgttgttc
tcggcgacatttacccaggacattatcaatctttcccagcagtggacctttgaaccggtg
acggttgagattgagcctgaatctgttgccaccgatacggtggaccagaaaatttatctg
gtcagcagcgaagagcgctaccgggtgcttaataacgtcattaaaagtgaagactgcaac
agcctgattgtgttcgccaatcgccgcgaccaggtgcggaggctgcacgagcggctgcgt
aagtcaggtgtgaaggcgggtattctgtcgggtgaaattccccagggtaagcgcacccgc
acactggaacagttcaaaaccggtgagatcaaggtgctggtggccaccgacgtggcgggg
cgcggtattcacgtcgatggcatcagccatgtggtgaactacaacctgcctgaggatccg
gaagactacgtgcaccgcatcggtcgtactggtcgtgccggcgccactggcacctctatc
agttttgctagtgaagacgacgcattcttgctgcctgacctcgaggccttgctcggcgcg
aagctggagtgcacctacccccctgcggagctgctcgtttag
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