Halioglobus japonicus: BST95_18950
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Entry
BST95_18950 CDS
T04687
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hja
Halioglobus japonicus
Pathway
hja03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hja00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BST95_18950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hja03021
]
BST95_18950
03400 DNA repair and recombination proteins [BR:
hja03400
]
BST95_18950
Enzymes [BR:
hja01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BST95_18950
Transcription machinery [BR:
hja03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BST95_18950
DNA repair and recombination proteins [BR:
hja03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BST95_18950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
AQA20014
UniProt:
A0AAP8MB16
LinkDB
All DBs
Position
complement(4017564..4021781)
Genome browser
AA seq
1405 aa
AA seq
DB search
MKDLLNLLKAQGQTEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESYVVTDPGMTTLEQGQLLSDEQYYEAMEEFGDEFSAKM
GAEAVQDLMMQLDLDHEIATLREEIPATNSETKIKKLSKRLKLMEAFANSGNKPEWMVLN
ALPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LRLHQCGLPKKMALELFKPFIFGKLEARGLATTIKAAKKMVEREPPEVWDILAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRERINAKGEGTLFANVSEVHRAYVAG
HVHLQARVKVRVTETVVQDEGDPITRTFVAETTVGRALLWEIVPAGIAFDMVNQDMAKKA
ISRIINQCYRVVGLKATVIFADRLMYTGYEYSTRSGSSIGVNDFEIPEEKATLIEHAEAE
VMEIEEQYAAGLVTQGEKYNKVIDIWSRANDLISKSMMEGLSKETVVNRDGEEEQQASFN
SVYIYADSGARGSPAQIRQLAGMRGLMAKPDGSIIETPIIANFREGLNVSQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTDAGLLMTPVIDGGDIIESLGDRVL
GRIVARDVMKPGSEDEIAITAGTMLDELWIKRLEEMSIDEIEVRSPITCETRHGICSACY
GRDLARGHRVNMGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRATAQDNIQVMNDGTVR
IHNLKTVENTDGNLVAVSRSGELSVLDVRGRERERYKLPYGAVLKVKDNEEVAAGAIVAN
WDPHTHPIITEVAGTVKFSGMEEGITIKRQTDELTGLSSISVMEASERPAAGKDIRPAVT
LVDDKGEELCLAGTNVPAHYFLPALALVSMEDGAKIGAGDVIARIPQEGSKTRDITGGLP
RVADLFEARKPKEPAILAEISGTVSFGKETKGKRRLVITPTDGKPLADGSDHYEVLIPKW
RNMSVFEGEFVEKGEVVSEGPPSPHDILRLKGIEELAKYIVNEIQEVYRLQGVKINDKHI
EVIVRQMLRKVIITTSGDSSLIKGEQVEYTTLLEENERLQAEGLVAATGERELLGITKAS
LATESFISAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHEERKRNR
DSDSDMMVSAQEIEAALTEALQADS
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacttacttaatctgctgaaagcccagggccagacagaagagttcgatgcgatt
cgcatcggcctcgcttcgccggaaatgatccgttcgtggtcatttggcgaggtgaaaaag
cccgaaactatcaactaccgtaccttcaagccggagcgtgacggcctgttctgtgccaag
atctttggcccggtaaaggactacgagtgtctctgtggcaagtacaagcgcctcaagcac
cgcggtgttatctgtgagaagtgtggcgttgaagttgcactggcgaaagtacgccgcgag
cgtatgggccacatcgagctggcgagccctgtggctcacatctggttcctgaagtccctg
ccgtctcgtatcggccttctgctggacatgaccctgcgcgatatcgagcgggtgttgtac
tttgaaagctacgtggtcaccgacccgggcatgacgaccctcgagcagggccagttgctg
tccgacgagcagtactacgaagctatggaagaattcggtgacgagttctccgccaagatg
ggcgcggaagcggtccaggacctgatgatgcagttggatctcgaccacgagattgccacg
ctgcgcgaagagatcccggcaaccaactccgagaccaagatcaagaagctgtccaagcgc
ctgaagctgatggaagcttttgccaactccggcaacaagcctgagtggatggtactgaac
gcgctgcccgtgctgccgccggatctgcgtccgctggtaccgctggacggcggtcgcttc
gcgacttccgacctgaacgatctataccgtcgtgttatcaaccgtaacaaccgcctgaag
cgtctgctggacctcaacgcgccggacatcatcgtgcgcaacgagaagcgtatgctgcag
gaatctgtggacgcactgttggacaacggccgtcgtggccgcgccattaccggctccaac
aagcgtccgctgaagtctctggctgacatgattaaaggtaagcagggtcgcttccgtcag
aacctgctcggtaagcgcgtagactactctggtcgttctgtgatcgtggtgggtcccacc
ctgcgtctgcaccagtgtggcctgcccaagaagatggccctggaactgttcaagccattt
atcttcggcaagctggaagcccgtggcctggccacgacgattaaagctgccaagaagatg
gtggagcgcgagccgccggaagtatgggatatcctcgccgaagtcattcgcgagcacccc
gtactgctgaaccgtgcaccgaccctgcaccgtctcggcattcaggcatttgagcctgtg
ctgattgaaggtaaggcaatccagctgcacccgctggtttgtgcggcctacaacgctgac
ttcgacggtgaccagatggcggtacacgtaccgctgactctggaagcccagttggaagcg
cgcgcactgatgatgtctaccaacaacatcctgtcgcccgccaacggtgagcccattatc
gtaccttcccaggacgtggttctgggcctgtactacatgacccgtgagcgcattaacgcc
aagggtgagggcacgctgtttgccaacgtttccgaagtgcaccgtgcttacgttgccggt
cacgtacacctgcaggcccgcgtcaaggttcgtgtcaccgagactgtggttcaggacgag
ggcgacccaatcactcgtacctttgttgctgaaaccaccgtcggccgtgcgctgctgtgg
gaaattgtccccgccggtatcgccttcgatatggtgaaccaggacatggccaagaaggct
atctcccgcatcatcaaccagtgttaccgagtggttggcctgaaagcgactgtgatcttt
gctgaccgcctgatgtacaccggttacgagtactccactcgctccggctcctccatcggt
gtgaacgacttcgagatccccgaagagaaggctaccctgatcgaacacgcggaagccgag
gttatggagatcgaagagcagtacgctgccggtctggtaacccagggtgagaagtacaac
aaggtgatcgatatctggtcacgtgccaacgacctgatctccaagtcgatgatggaaggc
ctctctaaagagactgtggtcaaccgcgacggcgaggaagagcagcaggcatcctttaac
tccgtatacatctacgctgactccggcgcgcgtggttcgcccgcccagatccgtcagctg
gcgggtatgcgtggtctgatggccaagccggatggctctattattgagacacccattatt
gcgaacttccgcgaaggcctgaacgtatcgcagtactttatctctactcacggtgctcgt
aagggtctggcggataccgctctgaagactgcgaactccggttacctgacccgtcgtctg
gttgacgtggcgcaggacttggtagtgaccgaggacgactgtggcaccgatgccggtctg
ctgatgactccggttatcgacggcggcgacatcatcgaatccctgggtgaccgggtgctg
ggccgtatcgtggcccgcgatgtaatgaagcccggttctgaagacgagatcgcgattacc
gccggcactatgctggacgaactgtggatcaagcgtctggaagagatgagcatcgatgag
atcgaggttcgctcgcccattacctgtgagactcgtcacggtatctgtagcgcttgttac
ggtcgcgacctggcacgcggtcaccgcgtgaacatgggtgaagcgatcggtgttgtggca
gcccagtcgatcggtgaacccggtacccagctgaccatgcgtaccttccacattggtggt
gcggcatcccgggcgactgcccaggacaacatccaggtgatgaacgacggtaccgtccgt
attcacaacctgaagaccgtagagaacactgacggcaacctggtcgcggtaagccgctcc
ggtgaactttctgttctcgatgtacgcggccgcgagcgtgagcgctacaagctgccctac
ggtgctgtgctgaaagtgaaggacaacgaagaggttgccgctggcgccatcgttgccaac
tgggatccccacactcacccgatcatcaccgaggtggccggtaccgtgaagttcagcggt
atggaagagggtattaccattaagcgccagaccgacgagctgactggtctgtccagcatc
tcggtgatggaagcctccgagcgtccggctgcaggtaaggacatccgtcctgccgtgacc
ctggtcgacgacaagggtgaggaactgtgcctggcaggtaccaacgtaccggcccactac
ttcctgcctgcgctggcactggtgagcatggaagacggtgccaagatcggcgcgggtgat
gttatcgcccgtatcccgcaggaaggctccaagacccgtgacatcaccggtggtctgccc
cgcgttgccgacctgttcgaagcgcgtaagccgaaagagcctgccattctggcggagatc
tccggtaccgtgtctttcggtaaagaaaccaaaggcaagcgtcgtctggtgattaccccg
actgacggcaagccgctggcggatggttccgatcactacgaagtactgattcccaagtgg
cgcaacatgagcgtgttcgagggtgaattcgtagagaagggtgaagtggtttctgaagga
ccgcccagcccccacgatatcctgcgtctcaagggcatcgaggaactggccaagtacatc
gtcaatgagatccaggaggtttaccgcctgcagggcgtgaagatcaacgataagcacatt
gaggtgattgttcgccagatgctgcgcaaggtgatcattactaccagcggcgattccagc
ctgatcaagggcgagcaggtcgagtacaccacgctgctggaagagaacgagcgtctgcag
gccgaaggcctggtggctgctaccggcgagcgcgagctgctcggcatcaccaaggcgtcg
ctggccaccgaaagcttcatctctgcggcctccttccaggagactacccgcgtactgacc
gaagctgcggtaaccggcaagcgcgactacctgcgtggcctgaaggagaacgtggttgtg
ggtcgtctgatccccgccggtactggcctggcctatcacgaagagcgcaaacgcaaccgc
gattccgactctgacatgatggtttctgctcaggaaatcgaagcggcgctgaccgaagca
ctgcaagctgatagctga
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integrated database retrieval system
