Halioglobus japonicus: BST95_18955
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Entry
BST95_18955 CDS
T04687
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
hja
Halioglobus japonicus
Pathway
hja03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hja00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BST95_18955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hja03021
]
BST95_18955
03400 DNA repair and recombination proteins [BR:
hja03400
]
BST95_18955
Enzymes [BR:
hja01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BST95_18955
Transcription machinery [BR:
hja03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BST95_18955
DNA repair and recombination proteins [BR:
hja03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BST95_18955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
AQA20015
LinkDB
All DBs
Position
complement(4021814..4025887)
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFGMLPKVMDVPYLLAIQLDSYRKFTQQGVPLDKRGAYGLHAAFKSV
FPIVSYSGNAALEYVDYALGTPVFDVNECQLRGVTYSCSLRVKVRLIIYDKDSSNKTIKD
IKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLYSARV
IPYRGSWLDFEFDPKDLVYVRIDRRRKLPATVLLRALGYQSEEILDMFYDVNTFHSDGEG
NYTITLIPERLRGDVAAFDIKAGKKVVVEQGRRITARHIRELEKANVTELEVPGDYLNGR
ALAKNIVDEKSGEILVECNTELTEEILAQLDEAGVKEIETLYTNELDCGPFISDTLRLDT
TRNELEALVEIYRMMRPGEPPTKESAENLFQNLFFSSDRYDLSAVGRMKFNRRLGREEVT
GEGILDKEDIVAVLSTLVDIRNGKGIVDDIDHLGNRRVRSVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVSAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARTNEYGFLESPYRKVK
NGKVTDDIEFLSAINEAEHVIAQASAPLDKNNNFVEELINVRHLNENTLKGADDIDYMDV
SPKQVVSVAAALIPFLEHDDANRALMGSNMQRQAVPTLVSDKPLVGTGMERHVAADSGVC
VVAKRGGVIDSVDASRIVVRVNDKDVGVDEAPVDIYNLTKYTRSNQNTCINQRPIVKTGD
AVARGDILADGPSIDMGELALGQNMRIAFMPWNGYNFEDSILVSERVVKEDRFTTIHIQE
LTCIARDTKLGPEEISSDIPNVGESALAKLDESGIVYIGAEVDAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPSSTKGTVIDVQVFTRDGLEKDARALQIEKHQLDE
YRKDLKEEFRIFEEATFARLGNLIKNKTTVSGGGLTKGTKLTEKVLNELDREQWFKLKLS
DSELNESLASAQRQLQEQEKLLEERFEDKKGKLQSGDDLAPGVLKIVKVYLAIKRRIQPG
DKMAGRHGNKGVISVIMPVEDMPYDENGEPVDIVLNPLGVPSRMNVGQILETHLGMAAKG
LGDKINVMIEEQKKVAEVRKFLEAIYNNGAGRTEDIKSLSDEEVMELAKNLSGGVPMATP
VFDGAAESSIKDLLTLADLPDSGQFTLYDGRTGDSFDRPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVTGRTKMY
KNIVDGDHRMEPGMPESFNVLVKEIRSLGIDIELENE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcatactcgtacactgagaaaaagcgtattcgcaaagatttcggcatgctgccgaag
gtaatggatgtaccttacctgcttgcgattcaactcgattcataccgtaaatttacccag
cagggtgttccactggataagcgcggcgcctatggcttgcacgcggcttttaaatccgta
ttccccattgtcagctactccggtaacgctgccctggaatacgtcgattacgcattgggc
acgcctgtctttgacgtcaacgaatgtcagctgcgcggtgtgacctactcctgctccctg
cgggtgaaagtgcgcctgatcatctacgataaggattcgtccaacaagaccatcaaggac
atcaaggaacaggaagtctacatgggggagatccccctgatgaccgacaacggtaccttc
gtcatcaacggtaccgagcgtgtaatcgtgtcccagctgcaccgttccccgggtgtattc
ttcgaccatgacaagggcaagacccactcctccggcaagctgctgtacagcgcccgggtg
attccctaccgtggctcatggctggacttcgagtttgaccccaaggatctggtatacgta
cgtatcgaccgtcgccgtaagctgcctgccaccgtgctgctgcgcgcgctgggttaccag
tcagaggaaatcctcgacatgttctacgatgtaaataccttccactccgacggcgaaggt
aattacacaatcaccctgattcccgagcgtctgcgcggcgacgttgctgcgttcgacatc
aaggctggcaaaaaggttgtggttgaacagggccgtcgtattaccgcccgccacattcgc
gagctggaaaaagccaacgttacagaactggaagtccccggcgattatctcaatggccgc
gccctggccaagaacatcgttgacgagaagtccggtgaaattctggttgaatgtaacacc
gagctgactgaagagattctggcccagctggacgaagccggcgttaaggaaatcgagact
ctgtacaccaatgagctggactgcggtccgttcatctccgacacgctgcgtctggacacc
acgcgcaacgaactggaagcgctggtagaaatttaccggatgatgcgccctggtgagccg
cccaccaaggagtccgccgagaacctgttccagaacctgttcttctcttccgaccgctac
gatctgtcagccgttggtcgcatgaagttcaaccgtcgcctgggtcgtgaagaagtcacc
ggcgaaggcattctggacaaagaagatattgttgcagtgctgtctaccctggtcgacatc
cgcaacggtaaaggcattgtcgatgacatcgaccacctgggtaaccgccgtgttcgctcc
gtgggcgaaatggcagaaaaccagttccgcgtcggtctggtacgtgtagagcgcgctgta
aaagagcgtctttccatggccgagagcgaaggcctcatgccccaggacctgatcaacgcc
aagccggtatccgctgctgtgaaggaattcttcggttccagccagctgtcccagtttatg
gatcagaacaacccgctgtctgaggtgacccacaagcgccgcgtctctgcactcggcccc
ggtggtctgacccgcgaacgcgccggattcgaagtgcgcgacgtacacccgacccactac
ggtcgtgtatgtccgattgaaacgcctgagggtccgaacattggtttgatcaactcgctg
gcaacctatgcccgcaccaacgagtacggcttcctggaaagcccgtaccgtaaggtgaaa
aacggcaaggtcaccgacgatatcgaattcctgtccgcgattaacgaagccgagcacgtc
attgcccaagcgtctgcaccgctggacaagaacaacaacttcgttgaagagctgattaac
gttcgccacctcaatgagaacaccctcaagggcgctgatgacatcgattacatggatgtc
tcgcccaagcaggtagtttccgttgcggcagcattgattccgttcctcgagcacgatgac
gcgaaccgcgccctgatgggctcgaacatgcagcgtcaggctgtaccgaccctggtgagc
gacaagccgctggtaggtaccggtatggagcgccacgttgccgccgactccggcgtgtgt
gtggttgccaagcgtggcggtgtcatcgactccgtcgacgccagccgcatcgtggtacgc
gtgaacgacaaggacgtaggtgtcgatgaggcgccggttgatatttacaacctgaccaag
tacacccgttccaaccagaacacctgcattaaccagcgcccgatcgttaagaccggcgac
gcggttgcccgcggcgatatcctcgccgacggtccgtcgattgacatgggtgagctggcc
ctgggtcagaacatgcgtatcgcgttcatgccctggaatggttacaactttgaggattcc
atcctcgtgtctgagcgtgttgtgaaggaagaccgcttcaccaccatccacattcaggaa
ctgacctgtatcgcccgtgacaccaagctggggcccgaggaaatctcctctgatatcccc
aacgttggcgagagcgccctggccaagctggatgagtccggcattgtctacatcggtgct
gaagttgacgccggcgatatcctggtaggtaaggtcacgccgaaaggtgagacccagctg
accccggaagagaaactgctgcgtgcgattttcggtgagaaggcctccgacgtaaaagac
acttccttgcgcgtgccttccagcaccaagggtactgtcatcgacgtgcaggtattcacc
cgcgacggtctggaaaaggacgctcgcgccctgcagatcgaaaagcaccagctggacgag
taccgcaaggacctgaaagaagagttccgtatcttcgaagaagcgacctttgcgcgtctg
ggtaacctgatcaagaacaagactaccgtctccggcggtggcctgaccaagggcaccaag
ctcaccgagaaggtactcaacgaactggatcgcgaacagtggttcaagctgaagctgtct
gacagcgagctgaacgaatccctggcttctgcccagcgtcagctgcaggagcaggaaaaa
ctgctcgaagagcgtttcgaagacaagaaagggaagctgcagtctggcgacgacctggcg
cctggcgtactcaagatcgtcaaggtttacctggcgatcaagcgtcgcatccagcccggt
gacaagatggctggacgtcacggtaacaagggtgtgatctcggtgatcatgccggtagaa
gacatgccctatgacgagaacggtgagccggtcgatatcgtgctcaacccgctgggtgta
ccgtcgcgtatgaacgtgggccagattctcgaaactcaccttggcatggcggcgaaaggt
cttggcgacaagattaacgtcatgatcgaagagcagaagaaggttgccgaggtgcgcaag
ttcctcgaggcgatctacaacaacggtgccggccgcacagaggacatcaagtccctgagc
gacgaagaagtgatggaactcgccaagaacctgtctggcggtgtacccatggcgacgccg
gtattcgatggtgctgctgaatcttctatcaaggacctgctgaccctggccgacctgcca
gacagcggccagttcaccctgtacgacggccgtaccggcgattcattcgatcgccccgta
acggttggctacatgtacatgctgaagctgaaccacctggtagacgacaagatgcacgct
cgttccacaggctcttacagcctcgttacccagcagccgctgggtggtaaggcccagttc
ggtggccagcgcttcggtgagatggaagtgtgggcactggaagcctacggtgcggcgtac
accctgcaggagatgttgaccgtgaaatcggacgacgtcaccggtcgtaccaagatgtac
aagaatattgttgatggtgaccatcgtatggagccgggcatgcccgagtccttcaatgtg
ttggttaaggaaatccgttcgctcggtatcgatatcgagcttgagaacgagtaa
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integrated database retrieval system
