Haematospirillum jordaniae: AY555_00995
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Entry
AY555_00995 CDS
T04366
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hjo
Haematospirillum jordaniae
Pathway
hjo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hjo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AY555_00995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hjo03021
]
AY555_00995
03400 DNA repair and recombination proteins [BR:
hjo03400
]
AY555_00995
Enzymes [BR:
hjo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AY555_00995
Transcription machinery [BR:
hjo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AY555_00995
DNA repair and recombination proteins [BR:
hjo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AY555_00995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Peptidase_M23
Phage_TAC_11
Motif
Other DBs
NCBI-ProteinID:
AMW33988
UniProt:
A0A143DCZ3
LinkDB
All DBs
Position
complement(192056..196288)
Genome browser
AA seq
1410 aa
AA seq
DB search
MNDLMKIFGQASGSQSFDQIKISIASPEKIRSWSFGEIKKPETINYRTFKPERDGLFCAR
TFGPVKDYECLCGKYKRMKFRGIICEKCGVEVTLSKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMTLKDLERLLYFENYLVIEPGLTPLKQYELLTEEQYQRAQEEYGEDSFTAG
IGAEAIRDMLMALDLEELKVQIRTEMRETSSEAKRKKLVKRLKLVEAFLESSCRPEWMIL
EVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRCPEIIIRNEKRML
QESVDALFDNGRRGRAITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
ELKLHQCGLPKKMALELFKPFIYSKLELYGLATTIKAAKRMVEKERPEVWDILEEVIREH
PVMLNRAPTLHRLGIQAFEPVLVEGKAINLHPLVCTAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPTQDMVLGLYYMSLEREGEKGGVAKVMVDGVEHERWTT
FGDLAEIEHALNAGTVSLHARVKARLKTVDAEGQPVVRTVVTTPGRMILASVLPHHAKVP
FELINRLLRKKDIQDVIDTVYRHCGQKETVIFCDRIMALGFRQAAKAGISFGKDDMVIPA
TKEKLVMETETQVKEFEQQYQEGLITQGEKYNKVVDAWSQCTDRVADEMMKEISRVEPGK
PINSVYMMAHSGARGSAAQMKQLAGMRGLMAKPDGSIIETPILSNFKEGLTVLEYFNSTH
GARKGLADTALKTANSGYLTRRLVDVAQDAIITEEDCGTERGLTAVPVMDGGELVVSLAE
RILGRTAAEDALNPSTGEVVFPKGEIITEADVERIEAAGVESLLIRSVLTCETQTGTCAK
CYGRDLARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQRGAEQSSIEASFDSR
VKLENLGIVRNSEGINIVLSRNCEVVLLDASSRERARHRVPYGAKLYVTDGQNVTRATKM
AEWDPYTLPIITEKEGTVHFMDLVEGVSMREQMDEATGISSRVVVDWKSQPRGADLRPRI
TLRDEAGELIMLPSGVEARYYMSVDSILSVEPGQRVSAGDVLARIPRESSKTRDITGGLP
RVAELFEARKPKDHAIIAEIDGRVEFGKDYKNKRRVLVVPITEDGPGEPMEYLVPKGKHL
AVQEGDYVKRGDPLMDGNPVPHDILRVMGVEALADYLIKEIQDVYRLQGVKINDKHIEVI
VRQMLQKVEISEAGDTTFLVGEQVDRIDFQNENEKTIREGGREAAGVPVLQGITKASLQT
HSFVSAASFQETTRVLTEASTSGKVDALVGLKENVIVGRLIPAGTGAAMNKYRQVAARRD
RELAAVQEAAAESVPVISSLSAAGVVPPAE
NT seq
4233 nt
NT seq
+upstream
nt +downstream
nt
atgaatgacctcatgaagatcttcggtcaggccagcggcagccagtcgtttgaccagatc
aagatttccatcgccagccctgagaagatccgttcttggtcttttggcgagatcaaaaag
ccggaaacgatcaactatcgtaccttcaagccagagcgtgacgggcttttctgcgctcgt
acctttgggccagtgaaggactatgagtgcttgtgcggcaagtacaagcgcatgaagttc
cgcggcattatttgcgaaaagtgcggtgttgaagtcaccctttccaaagttcgccgcgag
cgtatggggcatatcgagcttgctgctccggtggctcatatctggttcctgaagtcgttg
cccagccgtatcggtttgttgctggatatgacgctgaaggatctggaacgccttctgtat
tttgaaaactacttggttatcgaaccaggtctgacgcctctgaagcagtatgaactgctg
acagaagagcagtaccagcgtgcccaagaagaatacggcgaggacagcttcacggccgga
attggtgccgaagcgattcgcgatatgctgatggccttggatcttgaagagctcaaggtt
cagatccggactgaaatgcgcgagacgtcttcggaagccaagcgcaagaagttggtcaag
cgtctgaagcttgttgaggctttcctggaatccagctgtcgtccggagtggatgattctg
gaagttattccggttattccgcccgaattgcgcccgctggtgcctcttgacggtggtcgt
tttgctacgtcagacctcaatgatctgtaccggcgtgtgatcaaccgtaacaaccgcctc
aagcgtttgatcgaattgcgttgtccggaaatcattatccgcaacgaaaagcgtatgttg
caggagtctgtggatgccttgtttgacaacggtcgtcgcggtcgtgcgattaccggtgcc
aacaagcgcccgcttaaatccttggctgatatgctcaagggcaagcagggccgtttccgt
cagaacctgcttggcaagcgcgtcgattattccggccgttcggtcatcgtggttggtccg
gagttgaagctgcaccagtgcggtttgccgaagaagatggctctggagctcttcaagccc
tttatctactccaagcttgaactgtacggtctggccacgaccatcaaggcagccaagcgt
atggtcgagaaggagcgtcccgaggtttgggatattctggaagaggtcatccgcgagcat
cccgtgatgctcaaccgtgctccaacactgcaccgcctcgggatccaggcatttgagccg
gttctggtcgaaggtaaggcgattaacctgcatccgttggtgtgtacggcatttaacgcc
gactttgacggtgaccagatggccgtgcacgttccgctgtcccttgaggcgcagctggaa
gcccgtgtgttgatgatgtcgaccaacaacattcttagcccggcgaacggaaagcctatt
attgtgccaacccaggacatggttctggggctgtactacatgagcttggaacgcgaaggc
gagaagggcggtgttgccaaggtcatggttgatggcgttgagcacgagcgttggaccacg
ttcggcgatctggctgaaattgagcatgccctgaatgccggcacagtttctttgcatgcc
cgcgtgaaggcccggttgaaaactgtggatgcagaaggccagcctgttgtgcgtacggtg
gttacaacccctggccggatgatcttggccagtgtgttgccgcaccacgccaaggtgccc
ttcgagctaatcaaccgcctgctgcgcaagaaagatatccaggacgttattgatacggtt
taccgtcactgcggtcagaaagagaccgtgattttctgtgatcgcatcatggctctgggc
ttccgtcaggctgcaaaagccggtatttccttcggcaaggacgacatggtcatcccagcc
accaaggaaaagctggtgatggagaccgagacccaggttaaggagttcgagcagcagtac
caagagggcctgattacccaaggcgaaaagtacaacaaggttgttgatgcttggtcgcag
tgcacggatcgtgttgccgacgagatgatgaaggaaatatcgcgcgtcgagccgggcaag
cctatcaactcggtttacatgatggcgcactccggtgcgcgtggatcagcagcccagatg
aagcagctggccgggatgcgtggtcttatggccaagcctgacggctcaatcatcgagacg
cctatcctgtcgaacttcaaggaaggcttgacggttcttgagtacttcaactctacccac
ggtgctcgtaaggggctggcggatacagccctgaaaacagcaaactccggatatctgacc
cgccgtctggtcgatgtggcccaagatgccattatcaccgaagaagactgcggaacagag
cgtggcttgaccgctgttccggtgatggacggtggtgaactggttgtttcccttgctgaa
cgtattctgggtcggacggctgcggaagatgcgctgaacccctcaacgggtgaagttgta
ttccccaaaggtgaaattattaccgaagccgatgtagagcggattgaggcagccggggtt
gagtctctgcttattcgctcggttctgacatgcgaaacacagacaggaacctgtgcgaag
tgctatggtcgtgacttggcgcgtggtacgccggtgaatattggtgaggctgttggtgtg
attgcggcgcagtccattggtgagccgggtacgcagttgaccatgcgtacgttccacatt
ggtggtgcggctcagcgtggtgcggagcagtccagcatcgaggcctcgttcgactcccgc
gtgaagctggaaaatcttggtattgtccgcaattccgaaggcatcaatatcgtcttgtcg
cgcaactgcgaagttgtcctgctggatgcctcgagtcgtgagcgcgcccgtcatcgtgtt
ccctatggtgcaaagctgtatgtgacagatgggcagaatgtgacgcgtgcgaccaagatg
gccgagtgggatccgtatacgctgcctattattacagagaaggaaggtacggttcacttt
atggatctcgtcgaaggcgtgtccatgcgtgaacagatggatgaagcgaccggtatttcc
tcgcgcgtggtcgtagactggaaatcgcagccccgtggtgcggatctgcgtcccagaatt
actctgcgcgatgaggccggcgagctgatcatgctgccgagcggggttgaagcacgttat
tacatgtctgtcgactcgatcctttctgtcgagccgggacagcgtgtcagtgcaggcgac
gttttggcgcgtattccgcgcgaaagctccaaaacacgcgacatcaccggtggtctgccc
cgggttgccgagttgtttgaagcgcgcaagccaaaagatcacgcaattatcgccgagatc
gatggtcgggttgagttcggtaaggactacaaaaacaagcgccgtgttctggtcgttccc
atcacggaagatggtccgggcgagccgatggaatacttggttcccaagggcaagcacttg
gctgtccaagagggcgattatgtcaagaggggcgatccgttgatggatggaaaccccgtt
ccgcacgatatcctgcgggtcatgggtgtcgaggctctggctgactacctgatcaaggag
attcaggacgtttatcgtcttcagggcgtcaagattaatgacaaacacattgaggtcatt
gttcgtcagatgcttcagaaggttgaaatctctgaggctggggataccaccttcttggtt
ggtgagcaggttgatcgtatcgacttccagaacgaaaacgagaagaccattcgtgagggg
ggccgtgaggctgctggtgttcctgttcttcagggtattaccaaggcttccttgcagacc
cactctttcgtttctgcagcttcgttccaggagacgacccgtgttctgaccgaagcatct
acctctggcaaggtggatgctctggtgggtctgaaggaaaatgtgatcgttggtcgcctg
attccagccggaacgggtgctgcgatgaacaagtaccgtcaggttgcggcacgtcgtgat
cgggaacttgcggctgtccaagaagcagcagcggagtcggtacctgttatctcgtcatta
tcagcggctggagtcgttcctcctgctgagtga
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integrated database retrieval system
