Haematospirillum jordaniae: AY555_04415
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Entry
AY555_04415 CDS
T04366
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
hjo
Haematospirillum jordaniae
Pathway
hjo03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
hjo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AY555_04415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hjo03400
]
AY555_04415
Enzymes [BR:
hjo01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
AY555_04415
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
AY555_04415
DNA repair and recombination proteins [BR:
hjo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
AY555_04415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
NFACT_N
Phenyl_P_gamma
DUF1631
Motif
Other DBs
NCBI-ProteinID:
AMW34547
UniProt:
A0A143DCV1
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All DBs
Position
931284..932132
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AA seq
282 aa
AA seq
DB search
MPELPEVETVCRGLAPFLEQRILQEVDVRRADLRQPFPDNLQQRLTGRRVQRVHRRGKYY
IWDLDDGMCVLGHLGMSGSWRIHTAQDEQPAIGKHDHLVMRTDRDDTLTYHDPRRFGVLL
LVSSNALPGHPLLRSMGPEPLSDAFDGSILVQAFSRRRTTVKVALLDQGVVAGIGNIYAS
EALYRAGIAPDRPAHSLDERECRSLAGAVQSVLFDALESGGSSLRDHMQVNGELGYFQHR
FAVYDRMGQPCPDCTCDHTQGGGVRRIIQAGRSTFFCAMRQR
NT seq
849 nt
NT seq
+upstream
nt +downstream
nt
atgccggaactgcccgaagttgaaactgtatgccgcggattggcgccctttctggagcag
cgcatcctgcaagaggtggatgtgcgccgggctgatctgcgccagccctttcctgataat
ttacagcaaaggctaacagggcgacgggtccagcgcgtgcacaggcgtggaaagtactac
atatgggacctggatgacggcatgtgtgttctgggtcatctgggaatgagcggatcttgg
cgcattcacaccgcacaggatgaacagccagcgatcggaaaacatgaccacctggtcatg
cgtacggatcgcgatgataccctgacctatcacgacccgcgccgttttggtgtgctgctg
ctggtgtcatccaatgcactgcccggccaccccttgttacggagtatggggccggaaccc
ctgtccgatgcgtttgatggatctattctggtgcaggccttttcccgtcgccgtacgacg
gtgaaagttgcgttgctggatcagggtgtggttgccggaatcggcaacatctatgccagc
gaagccctgtaccgggccggcattgcgcctgatcgtccggcacacagcctggatgagcgg
gaatgccgatcccttgccggggccgtgcagtcggttctgttcgatgccctggaatccggc
gggtcctcgttgcgtgaccacatgcaggtcaatggtgagctgggatatttccagcaccgg
ttcgctgtgtatgaccgcatggggcagccatgtccggactgtacctgtgaccatacacag
ggtggcggcgtgcgccggatcattcaggccgggcgctcaacatttttctgtgcgatgcgg
caacgctag
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