Haematospirillum jordaniae: AY555_07945
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Entry
AY555_07945 CDS
T04366
Name
(GenBank) hypothetical protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hjo
Haematospirillum jordaniae
Pathway
hjo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hjo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AY555_07945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hjo03019
]
AY555_07945
Enzymes [BR:
hjo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AY555_07945
Messenger RNA biogenesis [BR:
hjo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AY555_07945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AMW35116
UniProt:
A0A143DEM3
LinkDB
All DBs
Position
complement(1685208..1686773)
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AA seq
521 aa
AA seq
DB search
MTPFSDLGLDPRLLKALEEEGYSIPTPIQGKAIPPALEGRDVLGLAQTGTGKTAAFTLPI
LHRLGCNPMRPAPRTARALILTPTRELAVQIGDSLAAYSRFMRLKRAVVFGGVGMGPQVR
FMNNGVDVLVATPGRLLDHVNQGTIRLNGTEIVVLDEADRMLDMGFIHDVKRLFRDLPPN
RQTLLFSATMPRAVEELTTDYLRESVRVEVAPQSTTAERIEQRVLFVHRGDKRDLLTDLL
NSNEVSRAIVFTRTKHGANRVVEHLSEQGIRADALHGDKSQGARQKALNGFRKGIVRALV
ATDIAARGIDVDGITHVINYELPNEPESYVHRIGRTARAGAGGIALSFCDNEEIAYLRSI
EKAIRMQVPMELEHAFHNTDIASLYASGRYVAPPKRGGGGGRPGGGRHPGKPGGERTRPG
RDRDDRNASFSGRTRDDGQHFSSRRNETTQGEGGRRPPREGQQAQDGYRAGKPFRQGERR
SFHADDRSGGERRGPDREFGQKRGFGGRSNMERRFQNRKPA
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atgaccccattttctgatcttggccttgacccgcgactgctgaaagcgctggaagaagaa
ggctactccataccaactcccattcagggaaaagccattcctcctgccttggaaggacgt
gatgttcttggcctcgcgcaaacgggaaccggaaagaccgctgcttttaccctgcccatc
ctgcatcgcctgggctgcaaccctatgcgccctgccccacgaacagctcgggcactgatc
ttgaccccaacgcgcgaattggccgtgcaaatcggggactccttggctgcctattcccgc
ttcatgcgcctgaagcgggccgtggtgttcggcggcgttggcatgggcccccaagtacga
ttcatgaacaatggcgttgatgttcttgtggcaactcccggtcgccttcttgaccatgtc
aatcagggcacaattcgcctgaacggaacagaaattgttgttctggacgaagcagaccgc
atgcttgacatgggcttcatccatgacgtcaaacgcctgttccgagacctgccgcccaat
cgtcaaacgctgctgttctcggccacaatgccacgggccgtagaggaactaaccacagat
tacctgcgggaaagcgtgcgtgttgaagtggcgccacagtccacgacagcagaaagaata
gaacagcgtgtcctgttcgtgcatcgcggtgacaagcgcgatctccttacagacctgctc
aacagcaatgaagtcagccgggccattgtctttacacgcaccaagcacggtgccaaccgg
gttgttgagcacctgagcgaacagggcatcagagccgatgccctacacggtgacaaatcc
caaggtgcacgtcagaaagcgctgaatggcttccgcaagggtattgttcgtgcgttggtc
gcaaccgatattgcagcccgcggcatcgacgttgatggcataacccacgtcatcaactat
gaactgccgaacgaacccgaaagctatgtacaccggatcggacgcactgcacgcgcaggc
gcaggcggcattgccctgtccttctgtgacaacgaggaaattgcttatctacggtctatc
gaaaaagctatccggatgcaggttccgatggaactggagcacgcattccacaatacagac
atagcaagcctttatgccagcggacgctacgttgcccctcccaagcgcgggggtggcggt
ggtcgcccgggcggcggacgccatcctggaaaaccgggcggtgaacgtacacgccccgga
cgcgaccgcgacgaccgcaatgcctccttctctggtcgcacacgggatgacgggcagcat
ttctcgtcacgccggaacgagactacgcaaggagaaggcggcagaaggccaccacgtgaa
ggacagcaggcacaggacggataccgcgccggcaaaccattccggcagggcgaaagacgc
agctttcatgcggatgatcgctctggcggtgaacggcgcggccctgaccgcgagttcggc
cagaagcgcgggtttggtggacgcagcaacatggaacgccgcttccagaaccgtaagcct
gcctga
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integrated database retrieval system
