Natrinema thermotolerans: DVR14_21945
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Entry
DVR14_21945 CDS
T05948
Name
(GenBank) intein-containing tRNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hjt
Natrinema thermotolerans
Brite
KEGG Orthology (KO) [BR:
hjt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hjt03016
]
DVR14_21945
Enzymes [BR:
hjt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DVR14_21945
Transfer RNA biogenesis [BR:
hjt03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DVR14_21945
Prokaryotic type
tRNA splicing ligases
DVR14_21945
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Intein_splicing
Hint
Mus7
Motif
Other DBs
NCBI-ProteinID:
QCC61297
LinkDB
All DBs
Position
unnamed6:366180..369077
Genome browser
AA seq
965 aa
AA seq
DB search
MTTYDADGITLERIREYVWEIPQEGDMRVPARVLASEALLEQIEDDKTLAQIKNTTHLPG
ITDHAICMPDGHQGYGFPVGGVGALDAETGCISPGAVGYDINCLTGDSEVLLEYGRRTPI
ETLEDRFEAENAMVADDDLTPSPIQLFTERENAAVYEVETETGDRITATADHPFRTPEGM
QPLEELSEGDEIHLQPFRGVPDEKPEDFTVLSEEDFADENSQLVRALEERDLLPLKSTDD
AFNRFLKLVGFHTGDGAIGSGGQTWFYGEPADLESIQNDIKAIGFTPSKIYERDRSHEID
GKTFETTEFSVRSTSKAFQRVLLALGAPDGRKIESDFTTPWYFDRLTGWQKALYVSAYFG
AEMNAPAAQHDKNLYCPKVSQTRVADVADAGEEFMVELASFLDDLGIETNEIERFETDSS
SDRETIRLRLGIKNDSENLIEFFSTVGYRYNHEKRKKAAKAIQYLKTKEAVIDRRATIAR
EAKAMADGGTPASDIKSQFDINERFIERSIWGGRSGRPRPPAEFPGFEDYCETTEVGEDY
TVSTRIRSIETVDEAQTVYDIGVAHDAHNFVANGFVVSNCGVRMMRTNLTYDEVQGREEE
LVDSLFANVPSGLGGGGIVEAGVDTVEEILARGVDWALENGHAVEEDLLHCEDEGMREGA
DPDKVSQKAKDRGKNQIGSLGSGNHFLEVQRVTDVFDGEVGEAYGLSEDQIVVLIHCGSR
GLGHQTCNDYLRKIEQQHEGLLNQLPDTELAAAPAGSQLAEDYYAAMNAAINFAWVNRQL
IMHRTRQVFERVFDRSWEEMDMHLLYDVAHNIAKKETHTVGEDGEERELYVHRKGATRAF
PAGHPEVPSAYRDVGQPVIIPGSMGAGSYVLRGGENSMDLTFGSTAHGAGRLMSRTQAKN
EFWGGDVQQDLEEQNQIYVKAQSGATVAEEAPGVYKDVDEVVRVSDALGIGDKVARTFPV
CNIKG
NT seq
2898 nt
NT seq
+upstream
nt +downstream
nt
atgactacctacgacgccgacggcatcacgttagagcggatccgcgagtacgtctgggag
atcccacaggagggcgacatgcgcgtcccggcgcgagtgttggccagcgaggccctgctc
gagcagatcgaggacgacaagaccttagcgcagatcaaaaacacgactcacctgccgggg
atcaccgaccacgcgatctgtatgcctgacggacaccagggctatggcttccccgtcggt
ggggtgggtgcgctcgatgccgaaaccggctgtatttcgccgggagcggtcggctacgac
atcaattgccttacaggcgattcggaagtactcctcgaatacggccgtcgcaccccgatc
gaaacccttgaggaccgcttcgaagcggagaacgcgatggtcgccgatgatgaccttacg
ccgtcaccgattcagctgttcaccgaacgcgagaacgcggccgtgtacgaagtagagacc
gagaccggcgaccgtattaccgcgactgcggaccacccgttccggacgcccgaggggatg
cagcctctcgaggaactctccgaaggcgacgagatccatctccaaccgttccgcggcgtt
cccgacgagaaacccgaggatttcaccgtcctcagcgaggaagacttcgccgacgagaac
tcgcaactcgtccgcgcgctcgaggagcgcgatctcctcccattgaagtcgaccgacgac
gcgttcaatcggtttctcaaactcgtcgggttccataccggcgacggtgcgatcggaagc
ggcggacagacgtggttttatggagaacccgcggatctcgaatccattcaaaacgatatc
aaagcgatcgggttcacgccctcgaaaatctacgagcgggaccgatcgcacgagatcgac
gggaaaacgttcgagacgacggagttcagcgtccgatcgacctcgaaggccttccagcgc
gtactcctcgcgctgggggcacccgacggacggaagatcgaatccgatttcacgacgccg
tggtacttcgatcgactgacgggctggcagaaagcactgtacgtctcggcgtatttcggc
gccgagatgaacgcccctgcggcccagcacgacaagaacctgtactgtccgaaggtgtca
cagacgcgcgtcgctgacgtcgccgatgccggtgaggaattcatggtagaactggcttcc
ttcctcgacgatctcggtatcgagacgaacgagatcgaacggttcgagacggactcgagt
tcggatcgagagacgatcagacttcgactcggaatcaaaaacgactccgagaacctgatc
gagttcttctcgaccgtcggctaccgttataaccacgaaaagaggaaaaaggcagccaaa
gcaatacagtatctcaagacgaaagaggcggtgatcgatcgtcgagcgacgatcgctcgc
gaagcgaaagcgatggccgatgggggaacgccagcgagcgacatcaaatcgcaattcgat
atcaacgagcggttcatcgagcggagtatctggggtggacgaagcggacgaccgcgaccg
ccggcggagtttcccggattcgaggattactgtgaaacgacggaagtcggcgaggattac
accgtttccacccggatcagatccattgagacggttgacgaagcgcaaacggtgtacgat
atcggcgtcgctcacgatgcgcacaatttcgtcgctaacgggtttgtcgtctccaactgc
ggcgtccggatgatgcggacgaacctcacctacgacgaagtacagggccgcgaggaggaa
ctcgtcgactccctcttcgcgaacgtcccgtcgggcctgggcggcggcggcatcgtcgag
gccggcgtcgacaccgtcgaggagatcctggcccgcggcgtcgactgggcgctcgagaac
ggccacgccgtcgaggaagacctcctgcactgcgaggacgagggcatgcgcgagggtgcg
gacccggataaggtgagccagaaggccaaagaccgcggcaagaaccagatcggctcgctg
ggctcgggcaaccacttcctcgaggtccagcgcgtcacggacgtcttcgacggcgaggtg
ggcgaggcctacggcctctccgaggaccagatcgtcgtcctcatccactgcgggtcgcgc
gggttgggccaccagacctgtaacgactacctgcggaagatcgagcagcaacacgagggg
ctgctgaaccagctgccggacacggagctggcggccgcgcccgccggctcgcagttggcc
gaggactactacgcggcgatgaacgccgcgatcaacttcgcgtgggtcaaccgccagctg
atcatgcaccgcacgcggcaggtcttcgagcgcgtgttcgatcgctcctgggaagagatg
gacatgcatctgctgtacgacgtggctcacaacatcgcgaagaaagagacccacacggtc
ggcgaggacggcgaggaacgcgaactctacgtccaccgcaagggcgcgacgcgggcgttc
cccgccggtcatcccgaggtcccatctgcctaccgtgacgtcggccagccggtgatcatc
ccaggcagcatgggcgcgggcagctacgtcctccgcggcggcgagaactcgatggatctc
accttcggctcgaccgcccacggtgcgggccggctgatgagccgtacccaggccaaaaac
gagttctggggcggcgacgttcagcaggacctcgaggagcagaatcagatctacgtcaag
gcccagtccggcgcgaccgtcgcggaggaggccccgggcgtctacaaggacgtcgacgag
gtcgtccgggtctcggacgcgctcgggatcggcgacaaagtcgcgcggacgttccccgtc
tgtaacatcaagggctga
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