Halomonas kashgarensis: R5M92_05425
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Entry
R5M92_05425 CDS
T11163
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hka Halomonas kashgarensis
Pathway
hka03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hka00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R5M92_05425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hka03019
]
R5M92_05425
Enzymes [BR:
hka01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
R5M92_05425
Messenger RNA biogenesis [BR:
hka03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
R5M92_05425
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
P-loop_SecA
AAA_22
Sacchrp_dh_NADP
DUF6570
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
XAW60718
LinkDB
All DBs
Position
1177988..1179247
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AA seq
419 aa
AA seq
DB search
MTFSDLGLHADLLRAVEAQGYSIPTPIQQQAIPAVLSGRDLLASAQTGTGKTAGFTLPML
QRLSQGKRPGKRQVKALVLTPTRELAAQVGESVATYGVHLPLRSHVIFGGVGQQPQVDAL
KPGLDILVATPGRLLDLHQQRHVDLSAVEILVLDEADRMLDMGFIHDIKRILKVLPPKRQ
NLLFSATFSNEIQTLATNLLDNPAFIEVAPRNTTAEKIDQAVYRVDREKKRDLLAHLITQ
HRWYQVLVFTRTKHGANRLAEQLSKQSIPAMAIHGNKSQSARTRALSSFKSGELQVLVAT
DIAARGLDINELPHVVNFDLPNVAEDYVHRIGRTGRAGSEGEAVSLVCVDEDGLLKNIER
LIKRNLEKRVEPGFEPDPSIKPEPIENGRRQQRKPSRRSGPAKAERGAREGSARRRQRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaccttttctgatctcggcttacatgccgatctgctacgtgccgttgaggcacaaggc
tactcaatccctaccccgatccagcagcaggcgattcccgctgtgctctcggggcgtgat
ctgctggctagcgcccagaccggaaccggcaagactgcgggcttcacgttgcccatgctg
caacgtctcagccaaggcaagcggccgggcaaacgccaggtcaaggcactagtgttaacc
cccacacgggaactggccgctcaggtaggggaaagtgttgccacctatggtgtgcatctt
cccctgcgctcacacgtgattttcggtggtgtcggtcaacagccccaggtcgatgccttg
aaacccgggctcgacattctcgtcgccacaccgggccgtttgctggacctgcaccagcaa
cgccatgtcgacctgtcggcggtggaaattctggtgctggatgaagccgaccgcatgctg
gacatgggcttcattcacgacatcaagcgcatcctcaaggtacttccacccaagcgccag
aacctgttgttctccgccacgttttccaacgaaattcagacgctcgccaccaatttgctg
gataacccagcttttatcgaggtcgctccgcgcaacaccacagcggagaagatcgaccag
gctgtctaccgggtagaccgtgaaaagaagcgcgacctgctggcccatttgattactcag
catcgctggtatcaggtactggtctttacccgtaccaagcatggcgccaatcgcttggcg
gaacagctttccaagcaatccatccccgctatggctatccacggcaataaaagtcagagc
gcccgcacacgtgccttgagctcgttcaagagtggagaattgcaggtgctggtagccacc
gacatcgccgcacgcggtctggatatcaacgaactgccccatgtggtcaatttcgatctg
cccaacgtggctgaagattatgtccatcgtatcggccgtaccggacgggcgggaagcgaa
ggtgaagcagtatcgctggtgtgtgtcgacgaggatggtttactcaagaatatcgagcgt
ctgatcaagcgcaacctggaaaaacgcgttgaacccggcttcgagcccgatcccagcatc
aagcccgagcccatcgagaacggccgtcgtcaacaacgcaagccttcccggcgcagcgga
cctgccaaagcggagcgtggagctcgcgagggttccgcacggcgacgtcaaagatcgtag
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