Halomonas kashgarensis: R5M92_06655
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Entry
R5M92_06655 CDS
T11163
Symbol
rne
Name
(GenBank) ribonuclease E
Organism
hka Halomonas kashgarensis
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
XAW60948
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Position
1444529..1447861
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AA seq
1110 aa
AA seq
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MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYRGKITRVEPSLEAAFVDF
GAERHGFLPLKEISREYFVKDVSGRPSIKEVLKEGQEVIVQVDKEERGNKGAALTTFISL
AGRFLVLMPNNPRAGGISRRIEGEERSQLKEAMGQMTVPDKMGLIVRTAGIGRSPEELQW
DLDYLVQVWESITSEAGKRSAPFLIYRESNVIIRAMRDYLRQDIGEVLIDSPEVHAEALG
FIRQVMPSYQQKLKLYADEVPLFSRFQIESQIETAYEREVKLPSGGSIVIDHTEALVSID
INSARATRGSDIEETALQTNSEAADEIARQLRLRDIGGLVVIDFIDMGPARNQREVENRM
RDALKLDRARVQIGRISRFGLMEMSRQRLRPSLGETSGVVCPRCNGQGTIRDVRSLSLSI
MRLIEEEAMKERSAQIRAILPVPVATYLLNEKRSVLADIEARQGVRVVLLPNPDMDTPHY
DVQRLRDDHLDDDDSSSLSSFELSTDTEVGKEPNHSFAPPAQRAEAAVKSVTHNAPAPAS
LQKEKPAPEEAPSVAPATTKPASRTSEGESGNVLGRLFRGVAKLLGGEESSSSTQATPAA
ADTQARRGASRDEQPSRTRTRSAQADNERQEARQASRPARGESRNDKPAEERGTPSRSRN
NRQRNRSEDAKPAQDKANQDKASQDKPNQNKPNPARSGKPSRKDNAAAKSEENKPEENKS
VDNKPEESKRGEKPETRAKAGNSPAPEPNAEAADKKDDGKPKRTRNNPRKRTRKHAIQPQ
AEAEQLKLQAQAQDDEQASANAAESATSPVAESASKAAPVAVAKEAPAAKEATAVSENEN
AAARKETAKSQRQEKTDAAASRQAPAVEPAASTPEAELSPDAQGPADAQVMADVTAPSEP
PATPEPEVKDEAQADAEVAQKTPQAAADDETASATGVSSATDAEANQEQQLDALGEPDAS
PRDSETPEAAEAEATHTAAPVHEEQTPAQDEVAGNKPDETPQAQPEEPKAEQPPVSDETQ
PVEAKEEQVQPRPSEAAPTQPQDVQVTGDGETPSSEPTAEAPEVTPQAQTEATADEPKQD
AQTKADKPRRRRAHNDPRELRKRQQEGGSE
NT seq
3333 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgctcatcaatgcgacccagcccgaagagctgcgcgtcgcgcttgtcgat
ggtcaacgcctctacgacctggatatcgaatccggcgctcgtgaacagaagaaagccaat
atctaccgcggcaagatcactcgagtagaaccctcactggaagccgccttcgtggatttc
ggtgccgagcgccacggcttcctgcctctcaaggaaatttcccgcgaatacttcgtcaag
gacgtctccggccgccccagtatcaaggaagtcctcaaggaaggtcaggaagtcatcgtc
caggtcgacaaggaagagcgcggcaacaagggcgcggcactgactaccttcatcagcctg
gccggtcgctttctggtcctgatgccgaacaacccccgcgcgggcggcatctcgcggcgc
atcgagggcgaggagcgcagccagctcaaggaggccatgggacagatgaccgtccctgac
aagatggggctgatcgtgcgtactgcgggcatcggccgctctcctgaagagctccagtgg
gacctcgactatctggtccaggtgtgggaatcgatcacgtccgaagccggcaagcgctcg
gcccccttcctgatctatcgtgaatccaacgtcatcattcgcgccatgcgcgattatctg
cgccaggatatcggcgaagtcctgatcgacagccccgaagtccatgccgaggcactcggt
ttcattcgccaggtaatgccgtcctaccagcagaagctcaagctctacgccgacgaagtg
ccactgttctcgcgcttccagatcgaatcccagatcgagaccgcctacgagcgcgaggtc
aagctgccttccggcggttcgatcgtcatcgaccataccgaagcgctggtttccatcgac
atcaactccgcccgcgccacccgcggcagcgatatcgaagagaccgccctgcagaccaac
tccgaagccgccgacgagattgctcgtcagctgcgcctgcgggatatcggcggcctggtg
gtgatcgacttcatcgacatgggcccggcgcgcaaccagcgcgaagtcgagaaccgcatg
cgcgatgcactgaagttggatcgcgcccgggttcagatcggccgtatatcgcgtttcggc
ctgatggaaatgtcgcgccagcgcctgcggccctcgctgggcgagaccagcggtgtggtc
tgcccccgctgcaacggccaaggtaccattcgggacgttcgctcgctgtcgctctcgatc
atgcgcctgatcgaggaagaagccatgaaggagcgcagcgcgcaaattcgcgccattctt
cccgtgccggtagcgacctacctgctcaatgagaagcgcagcgtgctggccgatatagaa
gcacgccagggtgttcgtgtggtgttgctgcccaacccggacatggacacgccccattac
gatgttcaacgtctacgtgacgaccatctcgatgacgacgattccagcagcctgtccagc
ttcgagctttccactgataccgaggtgggcaaggagccgaaccacagctttgcgccaccg
gcacagcgcgccgaagccgcggtgaagagcgtgactcataacgctccggctcccgcgtcg
ttgcaaaaggagaagccggcccccgaggaggcgcctagcgtcgctccggcaaccaccaaa
ccggcttcccgcacaagcgagggcgaatcgggcaatgttctgggtcgcctgttccgtggt
gttgccaaattgctcggcggcgaagaaagcagctccagcacccaagccactccagccgcc
gccgatacccaggcacgccggggcgcatcgcgcgacgaacaaccctcgcgcacccgtacc
cgttcggcccaggcagacaacgagcgccaggaggcacgccaggcatctcgccctgcgcgt
ggtgaaagccgcaacgacaagcctgccgaagagcgcggcactcctagccgttcgcgcaat
aaccgccagcgcaatcgctcggaagatgccaaacccgcccaggacaaggcgaatcaggac
aaggccagccaagacaagccgaatcagaataagccgaacccggctaggtccggcaagcct
tcgcgcaaggataacgccgcggccaagtctgaagagaacaagcccgaagagaacaagtca
gtagacaacaagcccgaagagagcaagcgcggagagaaacccgagactcgggccaaggcc
gggaacagtcctgctcccgaacccaacgccgaagctgcggacaagaaggatgatggcaag
cccaagcgtacccgcaacaaccctcgcaagcgcacgcgcaagcacgccatccagcctcag
gccgaagccgagcagctcaagcttcaggcgcaagcgcaggatgacgagcaagcgtctgcc
aacgcggctgaaagtgccacctcacccgtagcggaaagcgcttcgaaagcagcgccggta
gcagtggctaaagaagcaccagcagccaaggaagcgacagcggtcagcgagaacgaaaac
gcagcggcaaggaaggaaactgcgaaatcccagcggcaggaaaaaaccgatgctgctgcc
tcacggcaggcaccggcggtcgagccggctgccagcacgcccgaagcagagctatctccc
gacgcccaagggccggccgatgcccaggtaatggcggatgtcaccgcacccagcgagcca
cccgctacgccggaaccagaggtaaaggatgaggcgcaagctgacgcagaagtagcgcag
aagacgccgcaagcggccgcggacgacgaaaccgcttctgctaccggggtctcttcagcc
accgacgcggaggctaaccaggagcagcagctagatgcgcttggggagcctgatgcatcg
ccccgtgatagcgaaacgcccgaggcggctgaagctgaagcgacgcacaccgctgccccg
gtgcatgaagagcaaacccctgcgcaagatgaagtggctggcaataagccggacgagact
ccccaggcccagcctgaggagcctaaagccgagcagcccccggtaagtgacgaaacccaa
cctgtcgaagccaaggaagagcaagtccagcctcgtccctccgaagctgcgcccacccag
ccgcaggatgtacaggtaaccggtgatggcgagactccatcgagcgagcctacagcggaa
gcgcccgaggtgactccgcaggcacagacggaggcaaccgccgacgagccgaagcaggac
gcccaaacgaaggcggacaagccgcgccgacgtcgggctcataatgacccacgcgaattg
cgcaagcgtcaacaagagggtggcagcgaataa
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