Halomonas kashgarensis: R5M92_08315
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Entry
R5M92_08315 CDS
T11163
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
hka Halomonas kashgarensis
Pathway
hka03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hka00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
R5M92_08315 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hka03400
]
R5M92_08315 (recB)
Enzymes [BR:
hka01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
R5M92_08315 (recB)
DNA repair and recombination proteins [BR:
hka03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
R5M92_08315 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_25
ETF
Motif
Other DBs
NCBI-ProteinID:
XAW58313
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All DBs
Position
1807474..1811328
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AA seq
1284 aa
AA seq
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MSQDANGVTPLDPLTLPLHGSRLIEASAGTGKTFTIALLYVRLVLGGRHSDDDTAFVRPL
TPPEILVVTFTNAATQELRERIRNRLVEAAGVFRATPDKAKGAGQSEGLLPGPENAPGDS
GIPAIHGGQMAKVAPTEGFTAPSRRPAAEQPAADPLLLQLRDQYDPATWPACARRLELAA
EWMDEAAVSTIHSWCYRMLREHAFDSGSLFSLNLENDQQELEQEVVRDYWRTFYYPLDAE
ALGSITGYWKSPDQLHQDVRKLLHESDALGALRPEPKQTLSAAQAERSARLSELKSPWLT
WVNELRQLFDDGQKAKLFAANKMRKDHRGKWLDKIQDWAESDNIAPDIDKKAAAWKRLTP
DGIAEIWNGPPPAHPAFEAFDALPAALNTLPEPRNDLLIHAVQWCKVRLEREQERRAEMG
PNDLLTHLDRALQGPNKEALAAQILRQFPVALIDEFQDTDPIQYRIFNAVYEVARPRRDA
AMLLIGDPKQAIYAFRGADIFTYLKAREDTAGRHVTLGTNFRSSRAMVEAVNHCFRYADQ
HPAGAFLFREEGGNNPLPFLPVEAKGRSEQLIHQGQPLPAMTLWPLAADEPLSKTAYQTE
MAERCASYMAELLSAGQHGKSGFQTDDTLIPLKPSDIAVLVNGLQEARAIRQALASRGVK
SVYLSDHDKVFSSPMAAQVERWLRACAEPLASSRQAEAHLRAALATPVLGLSLAELDHLQ
QNELAWEARVEQFSRYHRLWQRQGVLPLVRRMMVDFDIPARLLAEFEEGERLLTDMLHLG
ELLQQASAELDGEHALIRFLFDAIADPESHGDSHKLRLESDADLVKVVTIHKSKGLEYPL
VFLPFIANHRPMKADDVPLRWHDGEGNLQLSLEADDAILATADRERLGEDLRKLYVALTR
ARHATWLGLAPLKGLENSALGYLLKGGSALSPEALNNALGELVEGSEIQVHQPPAPTTER
VAQVAQSSELGHARTPTRPAKEHWWIASYSALRLSGTLTAPVLPPLEPTTAQEATAFEVL
DEPRDLSQPEAYHLHKFPRGPGPGTFLHGLLEWAGKQGFDTAANDMDALNDMLWRRVQLR
GWQAWQELLAGWLSALLTTPLPLAAPTPQSVALNELESYQVELEFWFAAKRVNTHAIDAL
VSKHLLPGVERPALDADTLNGMLKGFIDLAFEHQGRFYVLDWKSNYLGPNDSAYEPEALR
HALLAKRYDLQAALYLLAMHRLLKARLPDYDPHQHLGGSMTVFLRGSRSPGRGVVGEPAP
VELIEALDSLFAGEPHATQQEATA
NT seq
3855 nt
NT seq
+upstream
nt +downstream
nt
atgagccaggatgccaacggcgtaacgccgctcgacccgctcaccttaccgctccacggc
agccgcttgatcgaagccagcgcgggcacgggcaagaccttcaccatcgcgctgctctac
gtgcgcctggtgctgggcggccggcacagcgacgacgacaccgccttcgtacgcccgctc
acgccgcccgaaatcctcgtggtcaccttcaccaacgccgccacccaggagctgcgcgaa
cgtatccgcaatcggctggtggaagccgccggggtgtttcgagcgacaccagacaaagcg
aagggagcaggccaaagcgagggtcttttgccagggccggaaaatgctcccggcgattcc
ggcattcccgccatccatggcggtcagatggcaaaagtagcccccacggaagggttcacg
gcgccctcgcgtcggcctgctgccgagcaaccggccgctgacccgctcctactccaactt
cgcgaccaatacgacccagccacctggcccgcctgcgcccgacgcctggagctggccgcc
gagtggatggacgaagccgccgtgtccaccatccatagctggtgctaccgcatgctgcgt
gagcacgccttcgatagcggcagcctcttctcgctcaatttggaaaacgaccagcaagag
ctggagcaagaagtggtgcgcgactactggcgcaccttctactacccgctggacgccgag
gccctgggcagcatcaccggctactggaaatctcccgatcagctacaccaagacgtgcgc
aaactgctccacgaaagcgacgcgctgggcgcgttacgcccggagcccaagcagaccctg
agcgccgcccaagctgagcgcagcgcacgcttaagcgagctaaagtctccatggttgact
tgggtaaacgagctacgacagctgttcgatgatggacagaaagcgaagctgttcgctgcc
aacaagatgcgcaaagatcatcgcggcaaatggttggataaaatccaagattgggcagaa
agcgacaacatcgctccagatatagataaaaaagcagcagcatggaagcggctaacgcct
gatggcattgcagagatatggaacggccccccacccgcgcacccagcgtttgaggctttc
gatgcattgcccgccgcgctaaacacgctgcccgagccgcgcaacgacctgctgattcac
gccgtgcagtggtgcaaagtgcgcctggagcgggagcaagagcgccgcgccgaaatgggc
cccaacgacctgctcacccacctggaccgcgccctgcaaggccccaacaaagaggcgctg
gccgcgcagatactgcgccagttccccgtggcgctgatcgacgagtttcaggacaccgac
cccatccagtaccgcatcttcaacgcggtgtatgaggtcgccaggccccgccgcgacgcc
gccatgctgctgatcggcgaccccaagcaggccatttacgcctttcgcggcgcggatatc
ttcacctacctgaaagctcgcgaagacaccgcaggccgccacgtgacgctgggcaccaac
ttccgctccagccgcgccatggtcgaggcggtgaaccactgcttccgctacgctgatcag
cacccggccggggcgttcctgttccgcgaagaaggcggcaacaacccgctgccctttctg
ccggtagaggccaaaggccgcagtgagcagctcattcaccaaggccagccgctgcccgcc
atgacgctctggccgctcgccgccgacgagccgctctccaaaaccgcctaccaaaccgag
atggccgaacgctgcgcctcgtatatggcggaactgctcagcgcaggccaacacggcaag
agcggctttcaaaccgacgatacgctcatcccgctcaagccctccgatatagcggtgctg
gtgaacggcctgcaagaagcccgcgccattcgccaagcgctggccagccgtggagtgaag
agcgtgtatctctctgaccacgataaggtatttagctcgcccatggccgcccaggtagag
cgctggctgcgcgcctgcgccgaaccgctggccagctcccgccaagccgaagcgcacctg
cgcgccgcgctggccacgccggtgctggggctaagcttggcggagctggaccacctgcag
caaaacgagctggcctgggaagcgcgagtagagcagttcagccgctaccaccgcctatgg
cagcgccagggcgtgctgccgctggtgcgacgcatgatggtggatttcgatattcccgct
cgcctgctggcggagtttgaagagggtgagcgcttgctcaccgacatgctgcacctgggc
gaactgctgcagcaggccagcgccgaactggacggcgaacacgcgctgattcgctttctg
ttcgacgccattgccgacccggaaagccacggcgacagccataaactacgcctggagagc
gatgcggatttggtcaaagtagtcaccatccacaaatccaaagggctggagtacccgctg
gtgttcctgccgttcatcgccaaccaccgcccaatgaaagccgatgacgtaccgctgcgc
tggcacgacggcgagggcaacctacaactcagcctagaagcggatgacgcgatactcgcc
accgccgaccgcgaacggctgggggaagacctgcgcaaactctacgtggcgctcacccgc
gcccgccacgccacctggctagggctggccccgctgaaaggcctggagaacagcgcgctg
ggctacctgctaaaaggcggtagcgccctgtcaccggaggcgctcaataacgcgcttggt
gagctggtggaaggcagcgagatacaggttcaccaaccgcccgcgcccaccacagagcgc
gtggcacaagtggcgcaaagcagtgagctgggccacgcccgcacgcccacgcgccccgcc
aaagagcactggtggattgccagttactccgcgctgcggctttccggcacgctcaccgcc
ccggtactgccaccgctggagcccaccaccgcccaggaagccaccgcgtttgaagtgctg
gatgaacctcgggatctatctcaaccggaagcatatcacctgcacaaattcccccgtggc
cccggccccggcacctttctgcacgggctgctggagtgggcgggcaagcaaggcttcgac
accgccgccaacgatatggacgccctcaacgacatgctgtggcggcgggtgcagctacgt
ggctggcaagcatggcaagaactgctggcgggctggctaagcgccctgctcaccacaccg
ctaccactggccgcgcccaccccgcaaagcgtggcgttgaatgagctggaaagctaccaa
gtagagctggagttctggtttgccgccaagcgggtgaacacccatgccatcgacgcgctg
gtaagcaagcacttactgccaggggtagagcgccccgcgctggatgccgacaccctcaac
ggcatgctgaaaggcttcattgacttggccttcgagcaccaggggcgcttttacgtgctg
gactggaaatcgaactacctgggccccaacgacagcgcctacgaacccgaagccctgcgc
cacgcgctgctggccaaacgctacgacctgcaggccgcgctctacttactcgccatgcac
cggctgctcaaagcgcgcctgccggattacgacccgcaccagcatttgggcggctcgatg
acggtatttctgcgcggcagccgcagccctgggcgcggcgtagtgggcgagcccgccccg
gttgaactcatcgaagccctggatagcctgtttgcaggcgagccacacgccacccagcag
gaggccacggcatga
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