Halomonas kashgarensis: R5M92_11575
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Entry
R5M92_11575 CDS
T11163
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
hka Halomonas kashgarensis
Pathway
hka02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hka00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
R5M92_11575 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hka03021
]
R5M92_11575 (rpoD)
Transcription machinery [BR:
hka03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
R5M92_11575 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
K-box
TMPIT
Motif
Other DBs
NCBI-ProteinID:
XAW58913
LinkDB
All DBs
Position
complement(2504321..2506171)
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AA seq
616 aa
AA seq
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MAGNAQQQSRLKELIARGKEQGFLTYAEVNDHLPEDIADPDQVEDIIGMINDMGISVVEE
APDEDTLMMSDHSTDESAAEEAVAALAAVESDVGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGTREVMSSLAYLPGAVSSILDAYDATQDEEAPGRLSDLFSGFIDPDEGIPGVA
EADLPEPEEKEELDDEDGESDEDEDEEDNTNEGGPDPEEAKARFEQIREQNALVQAALEK
HGRGSAELKSEQARLAELFSPIKLVPKHFERLVGQVRISVEQVRAQEKAVMQLCVKKAKV
PRKSFIKSFPGSESRREWLDDFQAAFPKYADRLEPLRADIARAQRKIAFEEDMVQLSVAE
LKEVNRKLSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRVSRQMLQEMGRE
PTPEELGERLEMPEDKVRKVLKIAKEPISMETPIGDDDDSHLGDFIEDGTMLLPIDMATG
EGLIEATRNVLGGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK
LRHPSRSEPLRSFLDE
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atggctggaaatgcgcagcagcagtcgcgtctgaaggagttgatcgcgcgaggtaaggaa
caggggttcctgacctacgccgaggtcaacgaccatctacccgaggatatcgccgacccg
gatcaagtggaagacatcatcggcatgatcaacgacatgggtatcagtgtcgttgaggaa
gcgcccgatgaagacaccttgatgatgtcggatcactccaccgatgaatccgcggcggaa
gaggccgtggcggccctggccgcggtggaaagcgatgtgggacgcactaccgacccggtc
cgcatgtacatgcgcgagatgggtacggtggagctgctcacccgcgaaggcgagatcgaa
attgccaagcggatcgaggagggtacgcgtgaagtgatgtcgtctctggcctaccttccg
ggggcggtcagctcgattctcgatgcctacgacgccactcaggatgaggaagcccctggg
cgtctctccgacctgttttccggtttcatcgatcccgacgagggtattcccggcgttgcc
gaggcggaccttcccgagcccgaggaaaaagaagaactggacgacgaggacggggaatcc
gacgaggacgaggacgaagaggacaacaccaacgagggtgggcccgatcccgaggaagcc
aaggcacgcttcgagcagattcgcgagcagaatgctctcgttcaagcggcactggagaag
catggtcgtggcagtgccgaactgaaaagcgagcaggcccgcctggcggaactgttctcg
ccgatcaagctggtgcccaagcacttcgagcgcctggtgggccaggtgcggatcagcgtc
gagcaggtccgtgcgcaggaaaaggcggtgatgcagctctgcgtgaaaaaggccaaggtg
ccgcgcaagagtttcatcaagtcctttcccggcagcgagtcgcgtcgtgagtggctggat
gattttcaggccgcctttcccaagtatgccgatcgtctcgagccgctgcgtgccgatatc
gcccgggcgcaacgcaagatcgcgttcgaggaagacatggtccagctgtcggtggccgag
ctgaaggaagtcaaccgcaagctctccatcggcgaggccaaggcgcgccgggccaagaag
gagatggtcgaggccaacctgcgtctggtcatttcgatcgccaagaaatacaccaaccgt
ggcttgcagttcctggaccttatccaggaaggcaacatcggcttgatgaaggcggtcgac
aagttcgaataccgccgtggttacaagttctcgacctatgccacctggtggattcgccag
gcgatcacccgctcgatcgccgaccaggcgcgtaccattcgtattccggtacacatgatc
gagacgatcaacaagctcaatcgcgtgtcgcgccagatgctgcaggaaatgggccgcgag
ccgacgccggaagagctgggcgaacgcctcgagatgccggaagacaaggtgcgcaaggtg
ctcaagattgccaaggagccgatctccatggagacgcccatcggcgacgatgacgactcg
cacctgggtgacttcatcgaagacggcaccatgctgctgccgatcgacatggccaccgga
gaaggcttgatcgaagccacacgcaatgtgctgggcggcttgactgcccgtgaagccaag
gtgctgcgcatgcgtttcggtatcgacatgaataccgaccatacccttgaggaggtcggc
aagcagttcgatgtcacccgcgagcgtatccgccagatcgaggccaaggcgttgcgcaag
ctgcgtcatccgagccgctcggagccactgcgctcgttcctcgacgagtaa
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