Halomonas kashgarensis: R5M92_13110
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Entry
R5M92_13110 CDS
T11163
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
hka Halomonas kashgarensis
Pathway
hka03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hka00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R5M92_13110 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hka03019
]
R5M92_13110 (pnp)
03016 Transfer RNA biogenesis [BR:
hka03016
]
R5M92_13110 (pnp)
Enzymes [BR:
hka01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
R5M92_13110 (pnp)
Messenger RNA biogenesis [BR:
hka03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
R5M92_13110 (pnp)
Transfer RNA biogenesis [BR:
hka03016
]
Prokaryotic type
tRNA degradation factors
R5M92_13110 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
KH-I_KHDC4-BBP
KH_2
S1_2
YtrI_sporulation
Motif
Other DBs
NCBI-ProteinID:
XAW59197
LinkDB
All DBs
Position
complement(2861386..2863536)
Genome browser
AA seq
716 aa
AA seq
DB search
MLKEVAVNPVKKTFQYGRSTVTLETGRIARQATGAVMVTMDDTVVLCTVVARKAANPAQP
FFPLSVHYQEKTYAVGKIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPKGFMNEVQVIC
TVLSTDRNHDPDIAAMLGTSAALMIAGVPFNGPIGAARVGFNEEQGYFLNPTVEELATSE
LNMVVAGTEKAVLMVESEAQELLEDEMLGAVLFGHQEMQAAIGAIKELTAEAGKPRWDWQ
PAEENAALKSAVAQAFEAKVGEAYRITDKMARQEALSAAKAEAVEQLAGEEDGQFSADDV
KGAFAALEKRVVRSRVVKGEPRIDGRDNRTVRPLDIEVGTLPKAHGSAVFTRGETQAIAI
ATLGTLRDSQLIESLEGERKDRFMLHYNFPPYCVGEAGFMGGPKRREIGHGRLARRGIQA
MLPAEDAFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGLVKDED
GFAVLTDILGDEDHLGDMDFKVAGSAEGVTALQMDIKIEGINEEIMETALMQAHAARQQI
LEQMNAVIGQSREDVSENAPSMATIKIAPDKIRDVIGKGGATIRKICEDTGASIDLDDDG
SVRIYAEDKAAAKRAIDTVLAITAEAEIGKLYKGKVVRIADFGAFVNIMPGTDGLVHISQ
IVPERVNNVRDFLNEDDEVVVKVLDIDNRNRVKLSMKEITEEEKSAFAAAEAETAI
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgctgaaggaagtcgccgtgaatccggtcaagaaaacattccagtacggtcgtagcacc
gtcacgctcgaaaccgggcgtatcgctcgccaggctaccggtgccgtcatggtcaccatg
gacgataccgtggtgctgtgtaccgttgtggccagaaaagcggccaaccccgcacaacca
ttttttccactctccgtgcactaccaggagaaaacctacgccgtgggcaagattcccggc
ggcttcttcaagcgtgaagggcgtccgaccgagaaagagaccctgacctcgcgcctgatc
gaccgcccgattcgcccgctgtttcccaagggcttcatgaacgaggttcaggtcatctgt
acggtgctgtccaccgaccgtaaccacgatccggatattgccgctatgctgggtacctcg
gcggcgctgatgattgccggcgttcccttcaatggccccatcggcgcggcgcgtgtcggc
ttcaacgaagagcagggctatttcctcaaccccaccgtggaagagctggctacctccgag
ctgaacatggtagtggcgggtaccgaaaaagcggtactgatggtggaatccgaagcccag
gaattgctcgaagacgaaatgctgggtgccgtactgttcggccatcaggagatgcaggcc
gcgatcggtgcgatcaaggaattgaccgccgaagccggcaagccccgctgggattggcaa
ccggcagaggagaacgcggcgttgaagagcgccgtggcccaagcctttgaagccaaggtg
ggagaggcctaccgcattaccgacaagatggcgcgtcaggaggctttgagcgcggcgaag
gcggaagccgtcgagcagctggccggcgaagaggacggccagttcagcgccgatgacgtc
aaaggtgcttttgccgccctggaaaagcgcgtggtgcgctcccgcgtggtcaagggcgag
ccgcgtatcgacggtcgcgacaaccgcaccgtgcgtccgctggacatcgaagtcggcacg
ctgcccaaggcccacggctcggcggttttcactcgcggggaaacccaggcgatcgccatc
gccaccttgggtacgctgcgtgattcccagctgatcgaatcactcgaaggcgagcgcaag
gaccgcttcatgctgcactacaacttccctccgtattgcgtgggtgaagcgggcttcatg
ggcggcccgaagcggcgtgaaataggccacggtcgtctggcacgccggggcatccaggcg
atgctgccggcggaagacgctttcccctacaccattcgcgtagtgtccgagatcaccgag
tccaacggttccagctccatggcgtccgtctgcggctcctcgctggcgttgatggatgcc
ggtgtaccgctgaaggcaccggtggcgggtatcgccatgggcctggtcaaggatgaagac
ggctttgccgtgttgaccgacatcctgggtgatgaggaccatctcggcgacatggacttc
aaggtcgccggctccgcagaaggcgtgaccgccctgcagatggatatcaagatcgagggc
atcaacgaggagatcatggaaaccgcactgatgcaggcccacgccgcacggcagcagatc
ctcgagcagatgaacgcggtgatcggccagagccgtgaggacgtgtcggaaaacgcccct
tccatggcaacgatcaagatagcgccggacaagatccgcgacgtgatcggcaagggtggc
gccaccattcgcaagatctgcgaagataccggtgcctccatcgatctcgacgacgacggc
agcgtacgtatctacgccgaagacaaggccgccgccaagcgtgccatcgataccgtgctg
gcgatcaccgccgaagcggaaatcggcaagctgtacaagggcaaggtggtgcgcatcgcc
gactttggcgccttcgtcaatatcatgccgggaaccgacgggttggtgcatatctctcag
atagtacccgagcgcgtcaacaacgtgcgcgacttcctcaacgaagatgacgaggtagtg
gtcaaggtgctcgacatcgacaaccgtaatcgcgtcaagctctccatgaaggagatcacc
gaggaagaaaaatcggcttttgccgccgctgaagccgaaactgcgatctag
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