Helcococcus kunzii: HIF96_05925
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Entry
HIF96_05925 CDS
T10363
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hku Helcococcus kunzii
Pathway
hku03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hku00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HIF96_05925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hku03019
]
HIF96_05925
03009 Ribosome biogenesis [BR:
hku03009
]
HIF96_05925
Enzymes [BR:
hku01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HIF96_05925
Messenger RNA biogenesis [BR:
hku03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HIF96_05925
Ribosome biogenesis [BR:
hku03009
]
Prokaryotic type
rRNA helicases
HIF96_05925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
Helicase_RecD
AAA_30
SBF_like
AAA_22
AAA_19
Astro_VPg
GxGYxYP_C
Motif
Other DBs
NCBI-ProteinID:
QZO75821
LinkDB
All DBs
Position
complement(1287245..1288867)
Genome browser
AA seq
540 aa
AA seq
DB search
MKFNELNLSNELIKAVADMGYEKPSPIQEKAIPTLLEGRDVIARAQTGTGKTAAFGIPLV
EMIEDENHIQGLILVPTRELAKQVSDEIKKIAKYKPHVKSIAIYGGSDMRRQIKSLKSGT
NIVVGTPGRVMDHLNRRTLKLSKLKFLVLDEADEMFDMGFRDDMKTIIDQTNPNRQTCFF
SATMGNDIMEFSKLYQNIPQQILIEQKELTVEKIKQYYLEMDSNMKKEILNRLLGMYNPN
LSIVFCNTKRMVDQLVTDLTKLGYNVDALHGDMKQSQRDNVMKRFRASTIEILIATDIAA
RGLDVENVDLVVNYDLPQQNDYYVHRIGRTARAGKKGISFTFVTSRDRNKLGEIERYTNS
KMEKMELPTIYDVRNNSRNQLKKDILKALINNTNKDEYIEVLNEILSEGNSLFDVSLSLI
KMIDDMQNRKKHEELNNVDYGKKFEISKPRTNSKRGSKVRKIKGPKMFINKGSRDGLDTN
LMIKTIKKYTKISASDIGNINIMPNFSFVEIPIDLLRGVIKDLNGKKVGGKVMRVEYSDK
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttaatgaattaaatttgtcgaatgagttaataaaggccgtagcagatatggga
tatgaaaaaccatcaccgattcaagaaaaagccattcctactcttttagaaggcagagat
gtaattgctagagctcaaacgggtactgggaaaacagctgcttttgggatacctttagtt
gaaatgatagaagatgaaaatcatatacaagggctaattttagtgccaacaagagagctt
gcaaaacaagtttctgatgaaataaaaaagattgcaaaatataaaccgcatgttaaatcc
attgcgatatatggtggttcagatatgagaagacaaattaagtctttaaaatcgggcaca
aatattgtagtaggtacacctggtcgtgttatggatcatctaaatagaagaacattaaag
ctttcaaaattaaaatttttagttttagatgaagctgatgaaatgtttgacatgggattt
agagatgatatgaaaactatcatagaccaaaccaacccgaatagacagacttgtttcttt
tcggcgacaatgggcaatgacataatggaattttcaaagctttatcaaaacattcctcaa
caaattctaatagagcaaaaagaactaactgtagaaaaaattaaacagtactatttagaa
atggattcaaatatgaagaaagaaattctaaatagattattaggtatgtataatccgaat
ctttcaattgtattttgtaatacaaagcgcatggtagatcaacttgtaacagatttaaca
aaattaggctacaatgttgatgcgcttcatggtgatatgaaacaatcccaaagagataat
gtaatgaagagatttagagcatccaccattgaaatattaattgcaacagatattgctgcg
agaggtttagatgtggaaaatgtagatttagtagtaaattatgatttacctcaacaaaat
gattactatgttcacagaattggccgtacagctagagctggtaaaaaaggcatttccttc
acctttgttacttcaagagatcgcaataaattaggcgaaattgaacgttataccaattca
aagatggaaaagatggagcttccaactatttacgatgttagaaataatagtagaaatcaa
ttgaaaaaagatattcttaaagctctaataaacaatactaacaaagatgaatatattgaa
gtattaaatgaaatcttatcagaaggtaatagtttatttgatgtttctctaagtttaata
aaaatgattgatgatatgcaaaatcgtaagaaacacgaggagctgaataatgtagactat
ggtaaaaagtttgaaatctctaaacctcgtactaattcaaaaagaggttcaaaggttaga
aaaatcaaaggtccaaagatgtttataaacaaaggctccagagatggcctggatactaat
ttaatgattaaaacaataaaaaaatacactaaaatctctgcatcagatattggcaatatc
aatataatgccaaacttttctttcgtagaaatcccaattgacttactaagaggagttata
aaagacttgaatggtaagaaagttggtggtaaggtgatgagagtagagtactcagacaaa
taa
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