Halorubrum lacusprofundi: Hlac_2377
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Entry
Hlac_2377 CDS
T00856
Name
(GenBank) AAA family ATPase, CDC48 subfamily
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
hla
Halorubrum lacusprofundi
Pathway
hla04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
hla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
Hlac_2377
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hla03019
]
Hlac_2377
03009 Ribosome biogenesis [BR:
hla03009
]
Hlac_2377
04131 Membrane trafficking [BR:
hla04131
]
Hlac_2377
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hla04147
]
Hlac_2377
Messenger RNA biogenesis [BR:
hla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
Hlac_2377
Ribosome biogenesis [BR:
hla03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
Hlac_2377
Membrane trafficking [BR:
hla04131
]
SNARE
SNARE associated proteins
Others
Hlac_2377
Autophagy
Aggrephagy
Other aggrephagy associated proteins
Hlac_2377
Exosome [BR:
hla04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Hlac_2377
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
CDC48_2
RuvB_N
AAA_16
AAA_2
TIP49
AAA_5
AAA_14
AAA_33
AAA_22
NPHP3_N
AAA_lid_PRS2_C
nSTAND3
AAA_7
AAA_28
RNA_helicase
Mg_chelatase
NB-ARC
AAA_3
IstB_IS21
DUF815
Sigma54_activat
ABC_tran
AAA_18
Parvo_NS1
AAA_17
SLFN-g3_helicase
Zeta_toxin
TsaE
AAA_30
AAA_11
PhoH
AAA_24
AAA_19
Vps4_C
bpMoxR
ATPase_2
Bac_DnaA
Molydop_binding
Motif
Other DBs
NCBI-ProteinID:
ACM57952
UniProt:
B9LSK5
LinkDB
All DBs
Position
1:complement(2371502..2373766)
Genome browser
AA seq
754 aa
AA seq
DB search
MNLTVRPLKQKDAGRRLAAIDRIAAEELGLSGGDIIRVEGPDGAAIARVWPGYPEDDGTG
VVRIDGRLRQEADVGIDDRVTVESVDVSRAESVTIAFPSQLRVRGQISPFIRDKLSGQPV
TEGQTIRTSLGFGLMGGQSQAVPMKVASTTPSGTVVITDDTEIEISEVPAEELTGPSEAG
GSGDGPDVTYEDIGGLDNELEQVREMIELPMRHPELFKRLGIDPPKGVLLHGPPGTGKTL
IAKAVANEIDANFHTISGPEIMSKYYGESEEKLREVFEEASEEAPAIIFMDELDSIAPKR
EEAGGDVERRVVAQLLSLMDGLEERGEVVVIGATNRVDAIDPALRRGGRFDREIEVGVPD
RDGRKEILQVHTRNMPLVDGIDLDEYAENTHGFVGADLESLAKESAMHALRRIRPELDLE
SDEIDADVLNSIQVTESDFKEAMKGIEPSALREVFVEVPDVSWDQVGGLEDTKERLRETI
QWPLEYPEVFEELDMQAAKGVLMYGPPGTGKTLLAKAVANESESNFISIKGPELLNKFVG
ESEKGVREVFSKARENAPTIVFFDEIDSIATERGKNSGDSGVGERVVSQLLTELDGLESL
EDVVVIATTNRPDLIDSALLRPGRLDRHVHVPVPDEEARRKILEVHTRNKPLADDVDLDA
IARKTEGYVGADIEAVTREASMNASRELIGSVSREEVGESVGNVRVTMQHFEDALDEVNP
SVTPETRERYEEIEKQFRRSEVNREETEPGTAFQ
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
atgaatctcaccgtcaggcccttaaaacagaaggacgccgggcgccgcctcgcggcgatc
gaccgcatcgccgccgaggagctcggactctccggcggggacatcatccgcgtcgaggga
ccggacggcgccgcgatcgcccgcgtctggcccggttaccccgaggacgacgggaccggc
gttgtgcgcatcgacggtcggcttcgccaggaggccgacgtcgggatcgacgaccgcgtg
accgtcgagtcggtcgacgtctcacgggcggagtcggtgacgatcgcgttcccgagccag
ctccgcgtgcgtggacagatatctccgttcatccgcgacaagctctccggtcagccggtg
actgaggggcagacgatccgcacgtcgctcggcttcgggctgatgggcggccagtcgcag
gcggtgccgatgaaggtcgcctcgacgaccccctcgggaaccgtcgtcatcaccgacgac
accgagatcgaaatctcggaggtccccgcagaggagctgaccgggccgagcgaggccggc
ggctccggcgatggaccggacgtgacctacgaggatattggcggcctcgacaacgaactc
gaacaggtccgagagatgatcgagctgccgatgcggcacccggagctgttcaagcggctc
ggcatcgacccgccgaagggcgtcctcctgcacggcccgccgggcacggggaagaccctg
atcgccaaggccgtcgccaacgagatcgacgcgaacttccacacaatctccggcccggag
atcatgtcgaagtactacggcgagtcggaggagaagctccgtgaggtgttcgaggaggcg
tccgaggaggcacccgcgatcatcttcatggacgagcttgactccatcgcgcccaaacgc
gaggaggccggcggcgacgtggagcgccgcgtcgtggcccagctgctctcgctgatggac
gggctcgaagagcgcggcgaggtcgtcgtcatcggggcgacgaaccgcgtcgacgccatc
gaccccgcgctccggcgcggtggccggttcgaccgcgagatcgaggtcggcgtccccgac
cgcgacgggcgcaaggagatcctgcaggtccacacgcggaacatgccgctcgtggacggg
atcgacctcgacgagtacgcggagaacacccacggcttcgtcggcgcggatctggagtcg
ctggcgaaagagtccgcgatgcacgcgctgcggcgcatccgtcccgaactcgacctcgaa
agcgacgagatcgacgccgacgtgctgaactccatccaggtcacggagtccgacttcaag
gaggcgatgaaggggatcgaaccctccgcgctgcgcgaggtgttcgttgaggtccccgac
gtcagctgggaccaggtcgggggcttggaggacaccaaagagcggctccgcgagacgatc
cagtggccgctcgagtaccccgaggtgttcgaggaactcgacatgcaggccgccaagggc
gtgctgatgtacggcccgccgggcacggggaagaccctgctcgcgaaggcggtcgccaac
gagagcgagtcgaacttcatctcgatcaaggggcccgagctgttgaacaagttcgtgggc
gagtccgagaagggtgtccgcgaggtgttcagcaaggctcgcgagaacgcgccgacgatc
gtgttcttcgacgagatcgattcgatcgcgactgagcgcggcaagaactccggcgactcc
ggcgtcggcgagcgcgtcgtctcccagctgctgacggagctcgatgggctcgaatcgctg
gaggatgtggtcgtcatcgcgacgacgaaccgtccggacctgatcgactcggcgctactc
cggcccggccggctcgaccgccacgtgcacgtgcccgtgccggacgaggaggcccgccgg
aagatcctggaagtccacacccggaacaagccgctggccgacgacgtcgacttggacgcc
atcgcccggaagaccgagggctacgtcggcgccgacatcgaagcggtgacccgcgaggcg
tcgatgaacgcctcccgagagctcatcggcagtgtctcgcgcgaggaagtgggcgagtcc
gtgggcaacgtccgcgtgacgatgcagcacttcgaggacgccttagacgaggtgaacccg
agcgtcactcccgagacgcgcgagcgctacgaggagatcgaaaagcagttccggcggtcg
gaggtcaatcgcgaggagaccgaacccggcaccgcgttccagtaa
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