Halosquirtibacter laminarini: K4L44_01160
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Entry
K4L44_01160 CDS
T10546
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hlam Halosquirtibacter laminarini
Pathway
hlam03410
Base excision repair
hlam03430
Mismatch repair
hlam03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hlam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
K4L44_01160 (recJ)
03430 Mismatch repair
K4L44_01160 (recJ)
03440 Homologous recombination
K4L44_01160 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hlam03400
]
K4L44_01160 (recJ)
DNA repair and recombination proteins [BR:
hlam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
K4L44_01160 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
K4L44_01160 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K4L44_01160 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
QZE14509
LinkDB
All DBs
Position
complement(271776..273497)
Genome browser
AA seq
573 aa
AA seq
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MQKEWKNKEPGDPNKVKNLSAALGVDIAIANLLVQRGITTFEESKKFFRPKLSDLHDPFL
MKDMDKAVGRLHKAIENQEKVLVYGDYDVDGTTSVALMCSFIRKFIKDYEYYIPDRYVEG
YGVSTQGIEYAKNNNFDLIIVLDCGIKAADKVDLATSYGIDFIICDHHNPDDVIPKAVAV
LNPKQEDCPYPYKELSGCGVGFKFLQAYCVRHHIPLDVIYDYLDVVVVSIAADIVPITGE
NRVLAYWGLQKLNSAPSIGLKTIIQNAGISGQELRINDIVFKIGPRLNASGRIEHGNKSV
RILLSENEEEASLLGSKIDSFNEIRKTLDRDITNQAYQMIVDNEEMIQQKCTVLYNRDWH
KGVVGIVASRLTEQFYRPTIILTESNGLATGSARSVGSFDLYEAIGKCSDLLESYGGHMF
AAGLTLKIDKVGEFRRRFNHIVEETLSEKDMVQTIEIDAKVSLSDINPKFVRILKQFEPL
GPHNSAPIFVTEDVLDHGTSRLVGKSLEHLKLDLVEPNRTTAVFSGIAFSQGHYFNIIKQ
AMPFDICYMITENEFRGKVTTQLNVKDIRSHES
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaagagtggaaaaataaagagcctggtgacccgaataaggtcaaaaacttatct
gctgccttaggtgtagatatagctatagcaaacttactggttcaaagaggtattacaacc
tttgaagaatctaagaaattctttcgtccaaagttaagtgatcttcacgaccccttctta
atgaaagacatggataaggcggttggaaggctacataaagcaattgaaaaccaagagaaa
gtcttagtttatggagactatgacgtggatggaaccacatctgttgcattgatgtgcagc
ttcattcgtaaatttatcaaagattatgaatactacattccagaccgatatgtagaaggt
tacggagtatccactcaaggaattgaatatgctaaaaataacaacttcgatcttattatt
gtattggactgtggtatcaaagcggcagacaaagtagatttagccacttcttatggtatt
gatttcattatttgtgatcaccataatcctgacgacgtcatccctaaagcagttgcagta
cttaatccaaagcaagaagactgcccctacccttacaaagaactatcaggttgtggagtt
gggtttaaattcctccaagcatattgtgttcgtcaccatattcctctcgatgtaatatac
gactatttagacgttgtggttgtcagtattgctgcagatattgtccctatcactggtgaa
aatagagtattagcatattggggacttcagaaactgaatagtgccccttctattggcctc
aagaccattattcaaaatgcgggtatttcaggtcaagaacttagaattaatgatattgtt
tttaaaataggtccgcgtcttaatgcttctggaagaatagagcatgggaataaatctgtt
cgcattcttctaagtgaaaacgaagaagaagcatctcttctaggtagcaaaattgactct
tttaatgagatacgcaaaacactcgacagagatattaccaatcaagcgtatcaaatgatt
gtggacaatgaagagatgatacagcaaaagtgtaccgttttatataatagagattggcac
aaaggtgttgttggtatcgttgcctcccgtttgactgaacaattttatcgacctaccatt
attcttaccgaatcaaatggtttggctactggatcggcacggagtgttggatcatttgat
ttatatgaagcaattggcaaatgttccgatcttcttgaatcatatggtggccatatgttt
gccgcaggcctgacacttaaaatagataaagtcggagaatttagacgtcgatttaatcac
attgtcgaagagacattaagtgaaaaagatatggttcaaactatagaaattgatgcaaaa
gtttcactttccgatataaatcctaaatttgtaagaattttgaagcagtttgaacctcta
ggacctcataacagtgctccaatttttgttacagaagatgttttagatcatggcacaagt
agacttgttggaaaaagccttgaacaccttaagttagatcttgttgaaccaaacagaacg
acagcagtgttttctggaattgctttttcacaggggcattattttaatataataaaacaa
gccatgccttttgacatatgttatatgataacagaaaatgagtttagagggaaagtcacg
acacaactaaatgtcaaagatattcgttctcatgagtcctaa
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