Halosquirtibacter laminarini: K4L44_10820
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Entry
K4L44_10820 CDS
T10546
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hlam Halosquirtibacter laminarini
Pathway
hlam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hlam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K4L44_10820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hlam03019
]
K4L44_10820
03009 Ribosome biogenesis [BR:
hlam03009
]
K4L44_10820
Enzymes [BR:
hlam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K4L44_10820
Messenger RNA biogenesis [BR:
hlam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K4L44_10820
Ribosome biogenesis [BR:
hlam03009
]
Prokaryotic type
rRNA helicases
K4L44_10820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
RecG_N
YpjP
Motif
Other DBs
NCBI-ProteinID:
QZE13081
LinkDB
All DBs
Position
complement(2771754..2773607)
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AA seq
617 aa
AA seq
DB search
MSFETLGLREELVLGVKELGFEKPTPIQSEAIPLLLEEQSDFVGLAQTGTGKTAAFGLPL
LNSIDSTISDTQGVIVCPTRELCLQIEKDLNNFSKKMSWIRVVSVYGGANIALQIRELRK
GAHIIVATPGRFVDLINRGKAQLSQVRVAVLDEADEMLNMGFKSELDAILSATPAHRSTW
LFSATMPSEVKRISRDYMSNPKELSVGAVNETSNNISHEYYPVKERDRYEALKRVIDFQP
NIYGVVFCRTRMETQEIADKLMRDGYSADSLHGDLSQAQRDSVMKSFRKKRIQMLVATDV
AARGIDVSDLTHVIHYKLPDDPEVYTHRSGRTGRAGKKGTSVAFITSKELRRLQDIQRMV
KAKFVEKEIPSIEDICQSKLYSLVDNLKDVTVHDEEIDQYIEKVSEKLDELSREELIKKI
VSKEFNQFLDYYRDARDISCTFKQLSKRSREDRGARTSSTSTSKSGMSRFFINAGHLDGL
NKGALVRIICESSSMRGHMIGAIDIKSAYSFFEVENSSEDQIINSSSSFEFEGKGLRVEK
AEGGGERRRGGSDRRGGERRGGSSDRRGGERRGGSDRKGGERRSGRRGFSGGDDNIHDNG
GGSRRFGNKRRSFKRSN
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgagttttgaaacattaggattacgcgaagagttggttttaggagtaaaagagttaggt
tttgagaaacctacaccaattcagtctgaagcgatccctttattgctagaggagcagtct
gattttgtcggattggctcaaacgggaactgggaaaaccgcagcatttggtctgccatta
ttgaatagtattgattctactattagtgacacacagggtgtcattgtctgtcctacacgt
gaattgtgtcttcaaatcgagaaagatttgaataatttctccaagaaaatgtcttggatc
cgtgtcgtgtctgtatatggtggggctaatattgcattgcaaattagagaactaaggaaa
ggtgcacatattattgttgctactcctggacgttttgttgacctaatcaaccgtggtaaa
gcacagttgagtcaagtgagggttgcagtgttagatgaggctgatgagatgttgaatatg
ggatttaagtcagaattagatgccatattgagtgccacaccagctcatcgatcgacttgg
ttgttttctgcaaccatgccatctgaagtaaaaaggatttcaagagactacatgtccaac
ccaaaagaactttcggttggtgcagttaatgaaacttcaaataatatttcacacgaatat
tatcctgttaaagaaagagatcgttatgaagcattaaaacgtgttatcgattttcagcca
aatatctatggtgttgttttctgtcgtactagaatggaaacacaagagattgctgataaa
ttgatgagagacggatatagtgctgattctcttcatggtgatttgtctcaagcacaaaga
gactctgtgatgaaatcatttagaaagaaacgcattcaaatgttggtggcaacagatgtt
gctgctcgtggtattgacgtttctgatcttacacatgttattcactataagttacctgat
gatccagaggtgtatactcaccgtagtggtcgtactggtcgtgctggtaaaaagggaact
tctgttgcctttattacaagcaaagaactacgtcgtctgcaggatattcagagaatggtg
aaagcaaaatttgtggagaaagagattccttctatcgaggatatctgtcaatctaagttg
tattcacttgttgataacttgaaagatgttactgttcatgatgaagagattgatcagtat
atcgaaaaagtatctgaaaagcttgatgagttgtcaagagaagaattgatcaaaaagatt
gtatctaaagagtttaatcaattcttagattattatcgtgatgctcgtgatatctcttgt
actttcaaacagctttctaagagatctagagaagatcgtggtgcacgcactagctctact
tctacttctaaaagtggtatgtctcgtttctttatcaatgcggggcatcttgatgggttg
aataaaggtgctttggttcgtatcatctgtgaatcttctagtatgagaggtcatatgatt
ggtgcgattgatatcaaatcggcttattcattcttcgaagtagagaatagctctgaagat
caaattataaattcttcttctagcttcgaattcgaaggaaaaggacttagagtggagaaa
gccgaaggtggtggagagcgtcgtcgtggcggttctgatcgcagaggtggagaacgtcgt
ggtggctcttctgaccgtagaggtggagaacgtcgtggtggttctgaccgtaaaggtgga
gaacgtcgtagtggtagacgtggattcagcggtggtgatgataacatccatgataatgga
ggtggtagccgtcgttttggaaacaaaagacgtagttttaaaagaagcaactaa
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