Halobiforma lacisalsi: CHINAEXTREME03975
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Entry
CHINAEXTREME03975 CDS
T04669
Name
(GenBank) recombinase RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hlc
Halobiforma lacisalsi
Pathway
hlc03410
Base excision repair
hlc03430
Mismatch repair
hlc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hlc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CHINAEXTREME03975
03430 Mismatch repair
CHINAEXTREME03975
03440 Homologous recombination
CHINAEXTREME03975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hlc03400
]
CHINAEXTREME03975
DNA repair and recombination proteins [BR:
hlc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CHINAEXTREME03975
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CHINAEXTREME03975
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CHINAEXTREME03975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH_CID
DHHA1
DHH
DUF6003
Motif
Other DBs
NCBI-ProteinID:
APW96978
UniProt:
M0LMA1
LinkDB
All DBs
Position
847768..849240
Genome browser
AA seq
490 aa
AA seq
DB search
MAGPVPELEDRATRCARRLCEADRVLLASHIDADGLTSAAIAAQALERAGLPFETVFEKQ
LDEEAIAAIAATDYDTVLFTDFGSGQLDVIGEHEDAGAFTPVIADHHQPADRDTEYHLNP
LLFGIDGASELSGAGASYVLARALADLEPGVAADGGATGAAGTTTARADNRDLAALAVVG
AVGDMQASGGELQGANERIVEEGVDAGVLETGKDLALYGKQTRPLPKLLEYATDVGIPGI
SGDEAGSLRFLEDLDLELRREDGEWRRWSGLTSEEKQTVASALVRRAVSRGVPAKKIDQL
VGTSYVLSAEPVGTELRDASEFSTLLNATARYERADVGLGVCLGNRSDALERARKLLRNH
RRNLSEGIDLVTREGVTHEAHLQWFHAEDRIRETIVGIVAGMAMGNEGISRSKPIVAFAE
KTDDEVKVSARGTHGLVRDGLDLSTVMTEASRAVDGDGGGHDVAAGATVPAGREAEFVER
ADEIVGEQLS
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atggcagggccggttcccgaactcgaggatcgcgcgacccgctgtgcgcggcgactgtgc
gaggccgaccgcgtgttactcgcttcgcacatcgacgccgacggactcaccagcgccgcg
atcgcggcccaagcgctcgagcgcgcgggactccccttcgagacggtgttcgagaaacag
ctcgacgaggaggcgatcgccgcgatcgcggcgaccgactacgacaccgtcctcttcacg
gacttcgggagcggccagctcgacgtcatcggcgagcacgaggacgcgggcgcgttcacg
cccgtgatcgcggatcaccaccagccggccgaccgcgacaccgagtaccacctcaacccc
ctgctgttcgggatcgacggcgcgtccgagctctcgggggccggcgcgagctacgttctc
gcccgggcgctggcggacctggagcccggcgtcgcggccgacggcggcgccacaggtgcc
gcaggaaccaccacggcccgcgcggacaaccgcgacctcgccgccctggccgtcgtcggc
gccgtcggcgacatgcaggcctccggcggcgaactccagggcgcgaacgaacggatcgtc
gaggagggcgtcgatgcaggcgtcctcgagacgggcaaggacctcgcgctctacgggaag
caaacccggccgctgccgaaactgctcgagtacgcgaccgacgtagggatcccgggcatc
tccggcgacgaggccggctcgctgcggttcctcgaggatctcgacctcgagttgcgccgc
gaggacggcgagtggcgccggtggtcgggactgaccagcgaggagaaacagaccgtcgcc
agcgccctggtcaggcgtgccgtctcgcgcggggttcccgcgaagaagatcgaccagctg
gtcgggaccagctacgtgctcagcgcggagccggtcggtaccgaactccgggacgcaagc
gagttctcgacgctgctcaatgcgaccgcccgctacgagcgcgccgacgtcggcctgggg
gtctgcctggggaatcggagcgacgcgctcgagcgtgcacgcaaactccttcggaaccac
cgccggaacctctcggaggggatcgacctcgtcaccagagagggcgtcacccacgaagcg
catctccagtggttccacgcggaggatcgcattcgcgagacgatcgtcggcatcgtcgcc
gggatggcgatgggcaacgaggggatcagccgctcgaagccgatcgtcgcgttcgcggag
aaaaccgacgatgaagtgaaagtgtcggcccgcgggacccacggtctggtccgggacggc
ctcgacctctcgacggtgatgaccgaggcctcgcgggccgtcgacggcgacggcggcggt
cacgacgtcgcggccggggcaacggtccccgccgggcgcgaagccgagttcgtcgaacgc
gccgacgagatcgtgggcgaacaactgtcctga
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