Natronobacterium lacisalsi: CHINAEXTREME10150
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Entry
CHINAEXTREME10150 CDS
T04669
Name
(GenBank) transcription elongation factor Spt5
KO
K15172
transcription elongation factor SPT5
Organism
hlc
Natronobacterium lacisalsi
Pathway
hlc03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
hlc00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
CHINAEXTREME10150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hlc03021
]
CHINAEXTREME10150
03019 Messenger RNA biogenesis [BR:
hlc03019
]
CHINAEXTREME10150
Transcription machinery [BR:
hlc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
CHINAEXTREME10150
RNA polymerase I system
CHINAEXTREME10150
Messenger RNA biogenesis [BR:
hlc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
CHINAEXTREME10150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spt5-NGN
KOW
DUF6093
Ribosomal_uL24m-like
KOW4_SPT5
SH3_KIN17_C
KOW2_Spt5
Motif
Other DBs
NCBI-ProteinID:
APW98127
UniProt:
M0L3I4
LinkDB
All DBs
Position
2117638..2118075
Genome browser
AA seq
145 aa
AA seq
DB search
MGIYAVKTTASQERTVADMIINREEPEIHAALAPDSLTSYVMVESDGDAVLQRVLEDIPH
ARSIVPGESDISEVEHFLSPKPDVEGIAEGDIVELIAGPFKGEKAQVQRIDEGKDQVTVE
LYEATVPIPVTVRGDQIRVLDSDER
NT seq
438 nt
NT seq
+upstream
nt +downstream
nt
atgggaatctacgcagtcaagaccaccgcgagccaggaacgcaccgtcgcggacatgatc
atcaaccgcgaggagcccgagatccacgccgcgctcgcgccggactcgcttacctcctac
gtgatggtcgagtccgacggcgacgcggtccttcagcgcgtcctcgaggacatcccccac
gcccggagcatcgtccccggcgagtccgacatttcggaagtcgagcacttcctctcgccg
aagccggacgtcgaggggatcgccgagggcgacatcgtggaactcatcgccggcccgttc
aagggcgagaaggcacaggtccagcgcatcgacgagggcaaggatcaggtgaccgtcgaa
ctgtacgaagcgacggtcccgattccggtgaccgttcggggcgaccagattcgcgtcctc
gattccgacgagcggtaa
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