Natronobacterium lacisalsi: CHINAEXTREME11190
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Entry
CHINAEXTREME11190 CDS
T04669
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hlc
Natronobacterium lacisalsi
Brite
KEGG Orthology (KO) [BR:
hlc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hlc03016
]
CHINAEXTREME11190
Enzymes [BR:
hlc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
CHINAEXTREME11190
Transfer RNA biogenesis [BR:
hlc03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
CHINAEXTREME11190
Prokaryotic type
tRNA splicing ligases
CHINAEXTREME11190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
APW98323
UniProt:
M0L651
LinkDB
All DBs
Position
2328504..2330015
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AA seq
503 aa
AA seq
DB search
MTDTTFDADGITLEKVREYVWEVPQEGDMRTPARVLASEALLEEIKEDKTLEQIKNTTHL
PGITNHAICMPDGHQGYGFPVGGVGALDAENGCISPGAVGYDINCGVRMMRTNLTYDDLQ
GREEELVDSLFANVPSGLGGGGIVKAGVDTVEEILERGVDWALENGHAVEEDLLHCEDEG
VRTEADASKISQKAKDRGKNQIGSLGSGNHFLEVQRVTDVFDDAVGDAYGLEEDQIVVLI
HCGSRGLGHQTCNDYLRKIEQQHQGLLNQLPDKELAAAPAGSQLAEDYYKAMNAAINFAW
VNRQLIMHRTRQVFERVFDRSWEEMDMHLLYDVAHNIAKKETHAVGVGPEGRPVRDGDAV
EHEERELYVHRKGATRAFPAGHPEVPKAYRDVGQPVIIPGSMGAGSYVLRGGENSMDLTF
GSTAHGAGRLMSRTQAKNEYWGGDVQDELEQQEQIYVKAQSGATVAEEAPGVYKDVDEVV
RVSDALGIGDKVARTFPVCNIKG
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgactgataccacgttcgacgccgacggcatcacgctcgagaaagtgcgtgagtacgtc
tgggaggtcccccaggagggagacatgcggacccccgcgcgggtgctcgcgagcgaagcc
ctcctcgaggagatcaaggaggacaagaccctcgaacagatcaagaacacgacccacctg
ccggggatcaccaaccacgcgatctgtatgcccgacggccaccagggctacggcttcccc
gtcggcggggtcggcgcactcgacgccgaaaacggctgtatttcaccgggagcggtcggc
tacgacatcaactgcggtgtccggatgatgcggacgaacctcacctacgacgacctccag
ggtcgcgaggaggaactcgtcgactcgctgttcgccaacgttccatcggggctgggcggc
ggcggcatcgtcaaggccggcgtcgacaccgtcgaggaaatcctggagcgcggggtcgac
tgggccctcgagaacggccacgcggtcgaggaggacctgctgcactgcgaggacgagggg
gtccgcaccgaggccgacgcctcgaagatctcccagaaagccaaagaccgcgggaagaac
cagatcggctcgcttggttcgggcaaccacttcctcgaggtccagcgcgtgaccgacgtc
ttcgacgacgcagtcggcgacgcctacggcctcgaggaggaccagatcgtcgtcctcatc
cactgtggctcgcgcgggctgggtcaccagacctgtaacgactacctgcggaagatcgaa
cagcaacaccaggggctgttgaaccaactgccggacaaggaactggccgcggcacccgcg
ggctcgcaactcgcggaggactactacaaggcgatgaacgccgcgatcaacttcgcgtgg
gtcaaccgccagctgatcatgcaccgtacgcggcaggtgttcgagcgggtcttcgaccgc
tcgtgggaggagatggacatgcacctgctgtacgacgttgctcacaacatcgcgaagaaa
gaaacccacgccgtcggggtcgggccggagggccgaccggtgcgagacggcgacgccgtc
gagcacgaggaacgcgaactctacgtccaccgcaagggcgcgactcgagcgttccccgcg
ggccaccccgaggtgccgaaagcgtaccgcgacgtcggccagccggtcatcattcccggc
agcatgggcgcgggcagctacgtcctgcggggcggcgagaactcgatggacctcacgttc
ggctcgaccgcccacggcgcgggccgactgatgagccgcacccaggcgaaaaacgagtac
tggggcggcgacgtccaggacgaactcgagcaacaggagcagatctacgtcaaggcccag
tcgggcgcgacggtcgccgaggaggctccgggcgtctacaaggacgtcgacgaggtcgtg
cgcgtctcggacgcgctgggcatcggggacaaggtcgcacggacgttcccggtctgtaac
atcaaaggctga
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