Haliaeetus leucocephalus (bald eagle): 104837434
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Entry
104837434 CDS
T08630
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
hle
Haliaeetus leucocephalus (bald eagle)
Pathway
hle03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hle00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104837434 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hle03021
]
104837434 (PCF11)
03019 Messenger RNA biogenesis [BR:
hle03019
]
104837434 (PCF11)
Transcription machinery [BR:
hle03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104837434 (PCF11)
Messenger RNA biogenesis [BR:
hle03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
104837434 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
DNA_pol3_a_NI
DUF6980
Motif
Other DBs
NCBI-GeneID:
104837434
NCBI-ProteinID:
XP_010574854
LinkDB
All DBs
Position
Unknown
AA seq
1708 aa
AA seq
DB search
MSAPESSAGSSEAREDACRDYQSSLEDLTFNSKPHINMLTILAEENVPFAKDIVSLIEAQ
IAKAPASEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRST
WDDIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESTAPTSAVT
SGASTPPAVPEIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQQ
GSSTIASVPAPSKQHMSPTPHMTVKPPHQTAVQSEKNKPSPSPPLHDIKIVNRDPRLNRM
AQHSSHAKDQSHRKEFPPNTTSQSDTKANKTTQAEKQNSTKQEKLKASEKTQKKELDQSE
AKSKSPSPLKNKLPNAKDTKSQECESTKVSEISKRDPRLKRHLQDKSEGKEEEVKEKRRS
TEKKEKEEHKTCEHRPVGSRNKVINGAVQKQDTTTEESEKQGGKQGRSSNRKRSRSRSPK
ARSPSTHSPKRRERRSPKRRLRSLSPTSSTPKIGKIRQIGPKQSHVEEGTQAARDERNSN
KRNVKQEVRDPRRVKKAQEDRPQEAASQHSTKVSPDPKENAENWQGSKSGKRWKSGWEEN
KNSQQNEEHQALGKSPHQRHRENWPAGKGILSPRAPKQQHRLSVDANLQIPKELTSASKR
ELLKKANERLTSGEITQDEFLMVAHQIRQLFQYQEGKHRCNVWDNPTEEKCGLKKKPLLS
DAELTYYEHKAKLKRTQVQHSLSRLDLLDPDDILDYHIPDALLSGIECEQAKAKRGVQFD
RKEPFGERSRRHSPVSGTNRPFADNLSPLESRRRLEEQNATKGARGSKNFDPYDSWGESD
EFRDALRQQGKSTTEFQKIDGDAICRFDNREDRQLLGQAGVREEPRSPFSERFKRTRYED
PEKAPFPESPGSRFGSIEAKQRISALMEDRPLFDGSPRQAAARVGVDGQGSPFVDGPAAG
SSSRIDGPPGQAAMRFEGPLVGAGASQFDGPLAGAGGAGPLRFDGPPGQLAGALRFEGPP
GQVGGGGPLRFEGPLGQIGGPLRFEGPAGQPVGGPRFEGPGVGLRFEGPRGQPSGGLRFE
GPHGQPMGPRGQPGGGLRFEGPHGQPLGPHGQPGGGLRFEGPHLQPLGPHGQPGGGLRFE
GPHGQPMGPHGPSGGGLRFEGPHGPSGGGLRLEGPHGQPGVGPRLIDGPVHQGAGGLRFD
GPLGRAGPRFDGCHAAGFDGQPGQLSLLQRFDGIHGQPGPRFERAPGQQAQPRFDTAIPQ
RFDGPHQPASRFDLPLGLQGARFENVANHPASRLEMSPYGQGGPFVDHPGQGYNGPSHGM
QFQRPDIFDGSPGPNFNGPAGPGAQNFPLRAGHYFDEKGLQGPQYGNFNNMPMGSNQVSL
MSAQAGPYGQGQQYLPNPGSFVQNPAGALPHSYPDNHLGQLDVNELFAKLLSTGILKLSK
TDSTSAQVNETSAQPAAEEEDDDQNEDQNVPDLTNFTVEELRQRYDSVINRLYTGIQCYS
CGMRFTTSQTDVYADHLDWHYRQNRTEKDVSRKITHRRWYYSLTDWIEFEEIADLEERAK
SQFFEKAHEEVVLKTQEAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKN
AIRVDEKIYHPSCYEDYQNTSSFDCTPSPSKTPVENPLNIMLNIVKQETPESCDSPKVKE
EPDDTPTACAEESTPASTDIKTEPDESV
NT seq
5127 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccccggagagcagcgctggtagcagcgaggcccgggaggacgcgtgccgcgat
taccagtcatcgctggaggacctgacgttcaacagcaagccgcacatcaacatgctgacc
atcctggccgaggagaacgtgcccttcgccaaggacatcgtctccctgatcgaggcgcaa
atcgccaaggctcctgcatcagagaagctccctgttatgtaccttatggattccattgtc
aagaatgtgggaagagaatatcttactgcatttactaaaaacctagttgcaacatttatt
tgtgtatttgaaaaggtggatgaaaatactaggaaaagtttatttaaattacgctccaca
tgggatgatatttttcctttgaagaaactatatgcacttgatgtcagagtcaactcatta
gatcctgcttggccaattaaacctctgcccccaaatgtgaatacttctagcatccatgtg
aatcctaaatttttaaataaatcgccagaggaatctactgcacctacctctgctgtcact
tctggtgcctctactcctccagctgttcctgaaatacaaaagaatttgacacaggagcaa
ctgataaggcagcaattgcttgcaaagcaaaagcagttgttagaacttcagcaaaaaaaa
ttagagctggagctggaacaaactaaagcacagttggctgtatctcttagtgttcagcaa
ggatcatctactatagcttcagttccagcaccttccaagcaacacatgtctcccacacct
cacatgacagttaaaccacctcatcagactgctgtgcaatccgaaaaaaacaaaccatcc
ccaagtcctccacttcatgatatcaaaatagtaaatagggatccccgacttaataggatg
gctcaacattcttctcatgctaaagatcaatctcataggaaagaatttccaccaaacaca
actagtcagtctgataccaaggcaaacaaaacaacacaggctgaaaaacaaaactcaaca
aagcaagaaaaattgaaagcaagtgaaaaaacacaaaagaaagaacttgaccagtcagaa
gcaaaatctaaatcaccatcccctttgaaaaataagctacccaatgctaaagatactaaa
agccaggaatgtgaaagcacaaaagtatctgaaattagtaagcgggatccaagactgaaa
agacatcttcaagataagtcagagggcaaagaggaggaggtgaaagaaaagcggagaagt
acagagaaaaaagaaaaagaggaacataagacatgtgaacatagaccagtaggcagcaga
aataaagtgattaatggtgctgttcagaaacaagacacgactacagaggagtcagaaaaa
cagggtggaaaacaagggagatcaagtaatagaaaacggtcacgatcacgctctcctaag
gcacggtcaccatctacgcattctccaaaaagacgagagaggagatcaccgaaaagaaga
cttaggagtttatctcccacttcatcaactcctaaaataggaaagatacgtcagataggc
cctaagcagtctcatgttgaagaaggcacacaagcagcaagagatgaaagaaattctaat
aagagaaacgttaaacaagaggtgcgagatccgaggagagtgaaaaaagcccaagaagac
aggccccaagaagcagcaagccagcattctacaaaagtgtctcctgatccaaaggagaat
gcagaaaattggcaaggatccaaatcaggcaagaggtggaaatctggttgggaagaaaat
aaaaactcacagcagaatgaagaacaccaagcacttggtaaatcccctcaccaaagacac
cgggaaaactggcctgctggcaaaggaattttatcaccccgagcaccaaagcagcagcac
cgcttaagtgtggatgccaatttacagatccccaaagaattgacatctgcaagcaagagg
gaattacttaagaaggcaaatgaacgtttaacatctggtgaaataacacaagatgagttc
ctcatggtagctcatcagatccgacagctgttccaatatcaggaaggaaagcacagatgt
aatgtctgggataaccctacagaagaaaaatgtggtttgaagaagaaacctcttctgtcg
gatgcagaactaacatattatgaacataaggctaaactaaaacgaacacaagttcagcat
tcattgtcaaggcttgatctgttggatcctgatgatattttggattatcatatacccgat
gcattgctttctggaatagaatgtgagcaagcaaaagccaagcgtggagtacagttcgac
agaaaagaaccgtttggagaaagatcaaggagacactctcctgtaagtggcactaacaga
ccttttgccgataacctctcaccacttgagagtcgacgaagacttgaggaacaaaatgct
actaaaggagcaagaggttctaagaactttgatccttatgacagctggggagagtcagat
gaatttagagatgctctcagacaacaggggaaaagcacaacagagttccagaaaatagac
ggtgatgcaatctgcagatttgataatcgtgaagacagacagcttcttgggcaagctggt
gttcgagaggaaccaagatcaccattcagtgaacgtttcaaaagaactagatatgaagat
ccagagaaagcaccgtttccggaaagtccaggatcaagatttggaagcattgaagcaaag
cagaggataagcgcactaatggaagacagacctctatttgatggctcacctagacaggct
gctgcaagggttggggtagatggacaaggaagtccttttgttgatggtcctgctgctggt
tcaagttccagaattgatgggccacctggacaggctgctatgagatttgaggggcctttg
gtgggggctggtgcctctcagtttgatggaccactagcaggagcagggggagctggaccc
ctaagatttgatgggccaccagggcagctcgcaggggccctgaggtttgaaggaccccca
ggacaggttggtggaggaggtccactgaggtttgagggacctcttgggcagataggtggg
cctctgcgattcgaggggcctgcagggcagcctgtaggtggtcctagatttgaaggacct
ggggttggtctcaggtttgagggtccccgtggtcagccttcaggtggtctcaggtttgag
ggacctcacggtcaacctatggggcctcgaggtcaaccagggggtggtctcaggtttgag
ggaccccatggtcagcccttggggcctcatggtcaaccaggaggtggcctcaggtttgag
gggccacatttacagccattggggccccatggtcaacctggaggtggcctcagatttgag
gggccacatggtcagcctatggggccacatggaccatcaggtggtgggctcaggtttgag
gggccacatggaccatcaggtggtgggctcagattggaaggaccacatggtcagccaggt
gtgggtcctaggttgattgatggaccagtacaccagggagctggtggacttagatttgat
ggtcctctgggtcgggccggtccgagatttgatggttgtcacgcagctggatttgatggt
cagcctggacagctgtctctcttgcaaagatttgatggaattcatggacagcctggtcca
agatttgaaagggcacctggccagcaggcacaaccccgatttgatacagccatacctcaa
agatttgatggacctcaccagccagcctctagatttgacttgccccttggccttcaaggt
gcacgttttgaaaatgtagctaaccatcctgcctcaagactagaaatgtcaccatatgga
caaggtggtccgtttgttgatcatcccggccagggctacaatggaccatctcatgggatg
cagttccagagaccggatatatttgatggttcgcctggaccaaatttcaatggaccagct
ggcccaggagcacagaacttcccattgagagctggacattactttgatgaaaaaggtctt
cagggtcctcaatatggaaacttcaataatatgccaatgggaagtaatcaggtttctctc
atgtctgctcaagcagggccttacggccaaggtcaacagtatttgccaaatcctggaagt
tttgttcagaaccctgcaggagcccttccacattcatatcctgataaccaccttggacag
cttgatgtcaatgaattgtttgctaaactgctgtcaacagggatcctcaaactgtcaaaa
actgactccacttcagcacaagtgaatgaaacatcagcccagccagctgctgaagaggaa
gatgatgaccagaatgaagatcaaaatgttccagacctcactaacttcacagttgaagaa
cttagacagcgctatgatagtgttataaatcgactgtacactggaattcagtgttactca
tgtggaatgaggttcactacttcacagacagatgtttatgcagatcatttagattggcat
tatcgtcagaaccggacagaaaaagatgttagcagaaaaattacacacagaagatggtac
tacagtttaacagactggattgaatttgaagaaatagccgatctagaggagcgtgcaaaa
agccagttttttgaaaaagctcatgaagaggtggtgttgaagacacaagaagctgcgaaa
gagaaggagtttcagagtgtccctgctggaccagctggagcagttgagagctgtgaaatt
tgccaagagcaatttgaacagtattgggatgaggaagaggaagagtggcacctgaagaat
gctatcagagtagatgaaaagatttaccatccatcttgctacgaagattaccaaaacaca
tcatcatttgattgcacaccatctcccagcaagactcctgtagaaaatccactaaatata
atgttgaacattgttaaacaagaaacaccagagtcctgcgactcacctaaagtcaaagaa
gaacctgatgacacccctactgcctgtgcagaagagagcacacctgcatctacagatatc
aagacagaacctgatgagtctgtttaa
DBGET
integrated database retrieval system
