Halobacillus litoralis: HLI_01310
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Entry
HLI_01310 CDS
T05828
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
hli
Halobacillus litoralis
Pathway
hli03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hli00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HLI_01310 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hli03019
]
HLI_01310 (rny)
Messenger RNA biogenesis [BR:
hli03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HLI_01310 (rny)
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
UPF0242
KH_2
DUF4407
Motif
Other DBs
NCBI-ProteinID:
QAS50929
UniProt:
A0A410M899
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All DBs
Position
complement(245448..247010)
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AA seq
520 aa
AA seq
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MDMISSLIFILLALIIGSVVGYLIRKSIAEAKISSAEELAKQIVDEGHRNAESAKKEALL
EAKEENQKFRQEAENEIRDRRMELQKTENRLTQKEENLDRKSGTLDQRDLSLEKKEGTLA
ERQQQIEEMESKVKAMLQEQQTELERVSGLTSDQAKQMILERVEQEVSHESALMVKEAEN
RAKEEADKKAKSILSLALQRCAADHVAETTVSVVNLPNDEMKGRIIGREGRNIRTLETLT
GIDLIIDDTPEAVILSGFDPIRRETARMALEKLVQDGRIHPARIEEMVDKSRREVDDYIR
EVGEQTTFEVGVHGLHPDLIKILGRLKYRTSYGQNVLKHSTEVAYLAGLLAAELGEDETL
ARRAGLLHDIGKAIDHEVEGSHVEIGKELAMKYKENETVINAVASHHGDEEPTSIISVLV
AAADALSAARPGARSETLENYIKRLEKLEEISESYEGVEKSFAIQAGREVRIMVRPDEID
DLEATRLARDIRNRIEGELDYPGHIKVTVIRETRSVEYAK
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atggatatgatatcctcgctcatcttcattttgcttgcccttatcatcggttctgttgtt
ggttatcttattcggaaatcgattgcggaggcgaaaatttcaagtgctgaagaacttgcg
aaacagattgttgatgaaggtcatcgcaatgcagaatcagcaaagaaagaggctcttctt
gaagcgaaggaagagaatcagaaatttcgtcaagaagcggagaacgagattcgtgaccgc
cgcatggaactgcagaaaactgaaaatcgtttgactcagaaagaagagaatctcgatcgt
aagagtggtacgcttgaccagcgtgatctttcactcgaaaagaaagaaggtactcttgcc
gagagacaacaacaaattgaagaaatggaaagcaaagtgaaagctatgcttcaagaacaa
caaacagagcttgaacgcgtatcaggcttaacatcagaccaggcgaaacaaatgatttta
gaacgagttgaacaagaggtgtctcatgagtcagcccttatggtcaaagaagcggaaaat
cgggctaaagaagaggcggacaagaaagcgaaaagcattctttcactagccttgcagcgt
tgtgctgcagaccacgttgctgaaacgacggtttctgtagtcaacctgccgaacgatgag
atgaaaggccgaatcatcggccgtgaaggtcgtaatatccgtacattagaaacgttgact
gggattgatttaattattgacgataccccggaagctgtcattctttcaggcttcgatcca
attcgccgtgaaactgcgcgaatggcccttgaaaaactcgttcaggatggacgtattcac
ccagctcgaattgaagagatggtggacaagtccaggcgtgaagtcgatgactatatacgt
gaagtaggggaacaaacgacatttgaagtgggagttcacgggttacacccggacctcatc
aagattcttggtcgcctgaagtatcgtacaagttatggacagaacgtcttaaaacactcg
accgaagttgcttatctagccgggttgctggctgctgagcttggcgaagacgaaacactt
gcccgacgcgcaggtttgcttcatgacatcggtaaagcgatcgaccatgaagtggaaggc
agccacgtagaaataggtaaagagttggctatgaagtacaaagaaaatgaaacagttatc
aacgctgttgcttctcaccatggtgatgaagagcctacatcaatcatttctgtcttggtc
gctgccgcagatgctctatctgctgctcgtccgggtgcgagaagtgaaactctggaaaat
tatatcaagcgtttagagaaacttgaagaaatatcagagtcttatgaaggagtagagaag
tccttcgctattcaagccggccgtgaagttcgaattatggttcgtcctgatgaaattgat
gatcttgaagctacaagattagcacgtgatattcgaaacagaatcgagggagaactcgat
tatccaggtcatattaaagttaccgtcattcgcgaaacacgttctgtggagtatgcgaaa
taa
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