Halobacillus litoralis: HLI_10930
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Entry
HLI_10930 CDS
T05828
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hli
Halobacillus litoralis
Pathway
hli03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hli00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HLI_10930 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hli03021
]
HLI_10930 (rpoC)
03400 DNA repair and recombination proteins [BR:
hli03400
]
HLI_10930 (rpoC)
Enzymes [BR:
hli01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HLI_10930 (rpoC)
Transcription machinery [BR:
hli03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HLI_10930 (rpoC)
DNA repair and recombination proteins [BR:
hli03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HLI_10930 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QAS52684
UniProt:
A0A410MD56
LinkDB
All DBs
Position
complement(2128923..2132534)
Genome browser
AA seq
1203 aa
AA seq
DB search
MLDVNNFEYMKIGLASPDKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPQKDWEC
HCGKYKRVRYKGVVCDRCGVEVTKAKVRRERMGHLELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEVIYFAAYIVTEPGETALEKKQLLSEKEYRSYREKFGQGFQAAMGAEAIRKLLY
DIDLDGEVDTLKEELKTAQGQRRTRAIKRLEVLESFRHSGNEPSWMILEVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPTIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPSLKMYQCGLPKE
MALELFKPFVMKELVARGLAHNIKSAKRKIERVHHEVWDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSSEAQAEARILMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLEREGAIGEGMFFKDLNEALMAYQNGYAHLHTRVAVQ
ASSLNNETFTEKQNRQLLLTTVGKLIFNEMLPNSFPYINEPTKENLEIKTPDHYFVENGT
NIRDEIAKREEVSPFKKGILGDIIAEVFKRFSISETSKMLDRMKDLGFAYSTKAGITVGV
SDVVVLPEKQKILDEAQEKVDRVLKQFRRGLITEEERYDRVIEVWSGAKDDIQNRLMNSL
NPRNPIFMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIVRDDDCGTDRGLPVSALKEGSEVIEPLL
DRLIGRTSFQKVTHPESGAVLAERNEVIYEDKARQIVEAGIEKIVIRTAFTCNTKHGVCK
KCYGRNLATGDEVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEIV
EARNPKGQAVITEIDGTVHEVNEVKEKQEILVQGSVESRSYTAPYGARMKVSVGDEVKAG
EPLTEGSIDPKELLTVKGLDGVQEYLLKEVQKVYRMQGVEISDKHVEVMVRQMLRKVRVL
DSGDTDVLPGSLLEIHQFKEANQKALIEGGQPAVGRPVILGITKASLETDSFLSAASFQE
TTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMTRYRKIQAQSEAKQQEVPSTTEEV
THS
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
ttgctagatgtaaataactttgagtatatgaaaatcggcctggcttcaccggataagatt
cgttcttggtcctacggtgaggtcaagaagccagaaaccatcaactatcgtacgttgaaa
ccagaaaaagacgggttattctgtgagcgtattttcggtccgcagaaggactgggaatgc
cattgtggaaaatacaagcgtgtccgctataaaggtgtcgtttgtgaccgttgtggtgtt
gaagtaactaaagcgaaagtacgccgtgagcgcatggggcacttagaattagctgcccct
gtctctcacatttggtacttcaaaggtatccctagtcgaatgggtcttgtattagacatg
tcccctcgagcactagaggaagtcatttattttgccgcttatattgtaacggaacctggt
gaaacggctcttgagaagaagcagttgctatctgaaaaagaataccgttcctaccgtgag
aaattcggtcaaggtttccaagctgctatgggggcagaagccatccgtaaactgctttac
gatattgatttggacggggaagtagatacactgaaagaggaactcaagacagctcaaggt
caacgtcgtacacgtgcaatcaaacgccttgaagtgcttgaatcgttccgtcactcagga
aacgaaccttcatggatgatcctggaagttctgccggttatcccgccagaattacggcca
atggttcaacttgacggtggccgtttcgcgacatctgacttgaatgatttgtaccgtcga
gtaatcaaccgtaacaaccgattgaagcgtttgttggatctaggtgcgccgacgatcatc
gtgcagaatgagaagcgtatgcttcaagaagctgtcgatgctcttatcgacaatggccgc
cgcggtcgtcctgttacaggaccaggaaaccgtccactcaaatccctttctcacatgttg
aaaggtaaacaaggtcgtttccgccaaaaccttctaggtaagcgtgtagactattccggt
cgttcggttatcgttgtcggtccatccctgaagatgtatcagtgtggacttccgaaagaa
atggcgctggaattgttcaagccattcgtaatgaaagaactcgtcgcacgagggttagcc
cataatatcaaatctgcgaagcgtaagattgagcgtgtccatcatgaagtttgggatgtt
ttagaagatgtcatcaaagaacaccctgttctgctgaaccgtgcaccgacactgcaccgt
ttaggaatccaggcttttgaaccgacacttgtcgaaggtcgcgcgatccgtttgcacccg
cttgtatgtacagcatataacgctgactttgacggggaccaaatggccgtgcacgtacca
ctatcttcagaagctcaagctgaagctcgtatcttgatgctggctgctcagaacatcctt
aatcctaaggatggaaaaccagtcgttacgccttcccaggacatggtattaggaaactat
tacttgaccttggagcgtgaaggtgcaattggtgaaggaatgttcttcaaagacttgaat
gaagcattgatggcgtatcaaaatggctatgcccaccttcacacacgtgtggctgtacaa
gctagttcattgaataatgagacattcacagagaaacagaacaggcagcttcttctgact
acggtcggtaagttgattttcaatgaaatgctgccgaattctttcccttatatcaatgaa
ccgacgaaagaaaacttagagattaaaacacctgaccactactttgtggaaaacggtacg
aatattcgtgatgagattgctaaacgcgaagaggtttctccattcaagaaaggtatcttg
ggagacatcatcgctgaagtcttcaaacgtttctctattagtgaaacgtccaagatgctc
gaccgtatgaaagaccttggattcgcttactccactaaggcgggtatcacagtaggtgta
tccgatgttgtcgtacttccagagaaacagaaaattcttgatgaagctcaagaaaaagtc
gacagagttctgaaacaattccgtcgtggtctgattacagaagaagaacgttacgatcgt
gttattgaagtttggtccggagctaaagatgatattcaaaaccgtctgatgaactcattg
aatccgcgaaatccaatcttcatgatgagtgattcaggagcacgtggtaacgcatctaac
tttacgcagcttgcaggtatgcgtggtctgatggccaacccggctggtaggatcatcgaa
cttccaatcaaatcaagtttccgtgaaggtctgacagtacttgaatacttcatctcgaca
cacggtgcacgtaaaggtctagccgataccgcgctgaagacagctgactcaggttacctg
acacgtcgtcttgtagacgtggcgcaggatgtcattgtacgggacgacgactgtggaacg
gacagaggattaccggtctccgctcttaaagaaggttcagaggtaatagaaccgttgctc
gatcgcttgatcggacgtacatccttccaaaaagtcacacatcctgaaagtggtgctgta
cttgctgaaaggaatgaagtgatttacgaagataaagctcgacaaattgttgaagcaggt
atcgagaagattgtcatccgtactgcattcacatgtaatacgaagcacggcgtctgtaag
aagtgttatggccgtaacttggcaactggtgatgaagttgaagttggtgaggcagttgga
attattgctgcacaatccatcggtgaaccaggtacccagcttacaatgcgtaccttccac
acaggcggtgtagccggagacgatattacacagggtcttccacgtatccaggagatcgta
gaagcgcgtaatccgaaaggtcaggctgttataactgagatcgacggaactgttcatgaa
gttaatgaagtgaaagaaaaacaggaaatcctcgttcaaggttctgttgagtcaagatct
tatacagctccatacggtgcacgtatgaaagtgtctgtgggtgatgaggttaaagctggt
gaaccactcacagaaggttcaattgatcctaaagaattgctgaccgtcaaagggcttgat
ggtgttcaggaatacttgcttaaagaagtacagaaagtttaccgcatgcaaggggtagaa
atttccgacaaacacgtcgaagtaatggttcgtcaaatgcttcgtaaagtacgtgtcctt
gactccggagatacggatgtacttccgggctcacttcttgaaatccaccaattcaaagag
gctaaccaaaaagcccttatcgagggtggacaaccagcagtcggccgtccggttatcctt
ggtatcaccaaagcgtcacttgaaacggatagcttcttatccgcagcatccttccaggaa
actacacgtgtcctgacagatgcagccatcaaaggtaagcgcgatgaattgctaggactg
aaagaaaatgttattatcggtaagcttgttccagcaggtaccggtatgacacgttaccgg
aaaatccaagctcagtctgaagcaaagcagcaagaggttccatcaactactgaggaagtc
acacactcctaa
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