Halobacillus litoralis: HLI_11255
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Entry
HLI_11255 CDS
T05828
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hli
Halobacillus litoralis
Pathway
hli03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hli00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HLI_11255 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hli03400
]
HLI_11255 (mfd)
Enzymes [BR:
hli01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HLI_11255 (mfd)
DNA repair and recombination proteins [BR:
hli03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HLI_11255 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
RecG_dom3_C
AAA_22
SecA_DEAD
UB2H
KGK
Motif
Other DBs
NCBI-ProteinID:
QAS52731
UniProt:
A0A410MDD4
LinkDB
All DBs
Position
complement(2191415..2194951)
Genome browser
AA seq
1178 aa
AA seq
DB search
MQGIKDYLYPQDDIHSVVEGFRSGMKEQMVAGLSGASRSVLLSLLQESLKRPVILVTHQL
IQAQQLYEDMQELTDSDQVHLYPVNELIASEIAVASPELRSQRIDALSQWLNQESGILIA
PVAALKRMMPPKAYWEHNQLPFRVGEEINLDTYLERFVSMGYERTEMVATPGEFSVRGGI
MDVYPLTAEFPYRIELFDTEVDSIRTFDSETQRSHEKVEAVTIGPATELLLTAEDFTRAY
HRLEEALGHSLKKLTKPEAKETLNQVIEHDLDRLKQQDRFQEMYKYIGYFYEEPVSLLDY
LPGSGIMVLDEMSRIQETANRLDQEEAEWHQSLLEVNQTVRQLNISFDWQDAWAKMEHPR
LYLSVFMRHIPNTQPQNVVNISSRQMQQFHGQMNLLKNEMDRWIKQDYSVIILAPDENRR
EKIQSVLEDYEMEAVIAKEEISLPLVKPTIITGNISSGFEWPMHKLAVLTENELFKKRTA
KPKRKQKLTNAERIKNYQELKVGDYIVHASHGIGKYLGIETLKMGGNHKDFLMVQYSGND
KLYVPIDQIDLIQKYVGSEGKEPKVYKLGGSEWKKVKSRVQSSVEDIADDLIQLYAEREA
SRGHAFTEDGEMQRDFEVAFPYEETEDQVRCIEEIKTDMERIQPMDRLLCGDVGYGKTEV
AIRAAFKAIVEGKQVALLVPTTILAQQHYETLQERFQGFGINIGLMSRFRTKKQQKETTD
RLRKGLVDVVVGTHRILSKDVQFKDLGLLIVDEEQRFGVKHKEKIKQLKHNVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPANRFPIQTYVLEYNPIFLREAVEREMARDGQVFFLFN
RVENIERMSQEISALVPEARVAFAHGQMNETELENVMFSFLEGEFDVLVSTTIIETGVDI
PNVNTLIVYDADRMGLSQLYQLRGRVGRSNRVAYAYFTYQKDKVLTEVAEKRLQAIKEFT
ELGSGFKIAMRDLSIRGAGNLLGAQQHGYIDSVGFDMYSQMLKDAIEAKRQGKEPEAIQP
FQPELDMMVDAYIPDDYIADEKQKIDMYKQFQAIESLEDIHDLRDELIDRFGEYPEEVEN
LFRVSSIRLHAKRSRIESVTEKKKKIEMLMESEQSQQIDGSKLFEFANQYGRMVQLGTED
SQLKATITWDRKSEWKRYEIVEEFISKLPEMMRETTTA
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgcaaggtattaaggattatctatatccacaggatgatattcattctgttgtcgaaggt
ttccggtcagggatgaaagaacagatggttgccggtttatcgggagcatcaagaagtgta
cttctatcattgctgcaagagtctttgaaaagaccagtgattttagtcactcatcaactg
atccaagcccaacaattgtatgaagatatgcaagaattgaccgacagtgatcaagttcac
ctttatccagtcaacgagctgattgcctcggaaatcgcggttgctagtccggagcttaga
agtcaacggatcgacgcacttagtcaatggttgaatcaagaatcgggaatattaatcgca
cctgtggctgccctgaaacggatgatgccaccgaaagcatactgggagcataatcagctc
ccttttcgtgttggagaagaaatcaatttggatacttatctggaacggtttgtaagtatg
gggtatgaaaggacggaaatggtagctacaccaggggaattttccgtgcgtggaggaatc
atggatgtctatccacttaccgctgaattcccttaccgtattgaattgtttgatacagaa
gtagattcgatccgcacattcgattcagaaacacagcgctcccatgaaaaggtggaggca
gttaccatcggtcctgctacagagttgcttttaacagcggaagatttcacacgtgcgtat
cacaggctggaagaggccctcggtcattccctgaaaaagttgacaaagccagaagcaaag
gaaacgttgaaccaagtaattgagcatgatttggatcggttgaagcaacaggaccggttc
caggaaatgtataaatatatcgggtatttctatgaagaacctgtgagtttactagattat
ttacctggaagcggtatcatggtgctggatgagatgagccggattcaggaaacagccaac
cgtttagatcaagaagaggcagagtggcatcaaagcttactggaagtcaatcaaacagta
cgtcagctcaatatatcttttgattggcaggacgcctgggcaaaaatggagcatcctcgt
ttatatctgtctgtgttcatgcgtcatattcccaatactcagcctcagaatgtcgtcaat
atatcaagtcgtcaaatgcagcaattccacggccagatgaacttattgaaaaatgaaatg
gaccgctggataaagcaggattattcagtcatcatacttgcgcctgatgaaaacagaagg
gaaaagatacagagcgttcttgaggattatgagatggaagcagttatcgctaaagaagaa
attagtcttcctttagtcaaacctacgattatcacagggaatatcagcagcggctttgaa
tggccgatgcataagcttgctgtacttactgaaaacgaattgttcaagaaacggactgcc
aaaccgaaacggaagcaaaaacttacgaatgcagagcggatcaagaactatcaagaattg
aaagtcggcgattatatcgttcatgcgagccatggcatcggtaaatatctagggattgaa
accttgaagatgggcggcaaccataaagactttcttatggtccaatactcaggtaacgat
aagctttatgtgccgatcgatcaaattgatctgattcaaaaatatgtaggatcagaaggt
aaggaaccgaaagtatataaacttggcggaagcgaatggaaaaaagtgaaaagccgagtc
caatcttcggtagaggatattgcggacgacttaatccagctttatgcggagcgggaagct
tctagagggcatgctttcacggaggatggagagatgcagcgagattttgaagtggctttc
ccatacgaagaaacagaagaccaagtccgctgtattgaagaaatcaaaaccgatatggaa
cgtatccagcccatggatcgattgctctgtggtgatgtaggttatggtaaaacggaggtt
gcgattcgagcagcctttaaagccattgtggaaggtaaacaagtagccttgctggtgccg
acgaccattcttgctcaacaacactatgaaaccctgcaggagcgcttccagggcttcggt
attaatataggcttgatgagccgtttcaggacgaagaaacagcaaaaagagacgactgat
cgtttgcggaaaggtttggtggatgtcgtagtcggcacacaccgtattctttccaaggat
gtccagttcaaggacttaggtttattgatcgtggatgaagagcagcgctttggggtgaaa
cacaaagaaaaaatcaaacaattgaagcataatgtcgatgtactgacattgactgccaca
ccgattccccggactttgcatatgtcgatgcttggggtaagggatttgtcagtgatagaa
acaccgcctgctaaccgtttcccgattcagacctatgtgttggagtacaacccgattttt
ctcagagaagcagtggaaagagagatggctcgagacggacaggtgttctttttgttcaac
cgtgtagagaatattgaacggatgtcccaagagatatctgctttagtgcctgaagcccga
gtggcctttgctcatggccaaatgaacgaaaccgaactggaaaatgtcatgttctccttc
ctggaaggggagtttgatgtccttgtcagtacgaccatcatagaaacaggcgttgatatc
ccgaatgtgaatacgcttatcgtttatgatgcggatcgtatgggccttagccagttgtac
cagttgcgaggtagagtagggcgctctaatcgggttgcatatgcttacttcacatatcaa
aaggataaagtattaacggaagtagcggaaaaaagactccaggcaatcaaggaatttact
gagcttggttctggatttaaaattgccatgcgtgacttatctattcgtggagccggaaat
ctactaggggcccagcaacacgggtatatcgattctgtagggttcgacatgtactcgcaa
atgttgaaagatgctatagaagcgaaacgtcaaggcaaggaacctgaagcgatccagcct
ttccagcctgaactggacatgatggtggatgcttatattccagatgactatattgctgat
gaaaaacagaaaatagatatgtataagcagtttcaagcgattgaatctctggaggatatc
cacgaccttagagatgaattaatcgatcgtttcggggaatatccagaagaagtagaaaat
ttgttccgtgtttcatctatacgtttacatgcaaagaggtcccgtatcgaatctgtcaca
gagaagaaaaagaaaatcgaaatgttgatggaatccgaacaaagtcagcaaatcgatgga
tccaaactgtttgaattcgccaatcaatacggaaggatggttcaactcgggacagaagac
agccagttgaaagcaacgatcacctgggaccgcaaaagtgaatggaaacgctacgaaatc
gtggaggaatttatcagtaagctccctgaaatgatgagagaaactactacagcttaa
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integrated database retrieval system
