Halobacillus litoralis: HLI_18020
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Entry
HLI_18020 CDS
T05828
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
hli
Halobacillus litoralis
Pathway
hli03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
hli00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HLI_18020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hli03400
]
HLI_18020
Enzymes [BR:
hli01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
HLI_18020
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
HLI_18020
DNA repair and recombination proteins [BR:
hli03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
HLI_18020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
QAS53970
UniProt:
A0A410MH12
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All DBs
Position
3598481..3599320
Genome browser
AA seq
279 aa
AA seq
DB search
MPELPEVETVRKTLHQMILGKKIERVSVFWGNIIKRPQDPEEFEQLLISQTIEGIDRKGK
FLIFQMNDVSLVSHLRMEGKFGVYDASVDKPKHTHVVFHFTDGTELRYNDVRKFGTMHAF
QKGREAVNKPLLQLGPDPFEKAFTLDYFYNKLLKTSRNMKAVLLDQSIVAGLGNIYVDEA
LFRAGIHPERIAKTLTKSEAEQVRKASINVILEAIDQGGTTIRSYLNSQGEIGMFQQQLR
VYGKQDRECFNCGTGITKLKVSGRGTHICPQCQPLHIPR
NT seq
840 nt
NT seq
+upstream
nt +downstream
nt
atgccagaactacctgaagtagaaaccgtaagaaagactttacaccagatgatactcggt
aaaaaaattgagcgggtctcggttttttgggggaatatcatcaaaaggccacaagatcca
gaggagtttgaacaactgctgattagtcaaacaatagagggaatcgatcgtaaagggaaa
ttcttaatctttcaaatgaatgatgtctcccttgtttcccatctcagaatggaagggaaa
tttggagtgtacgatgcatctgtagataaacctaagcatacccatgtcgtcttccatttt
acagatggaacggaattgcgctataacgatgtgcgtaaattcgggacgatgcatgcattt
caaaaaggaagagaagctgttaacaagcctttgttgcagttaggacctgacccttttgag
aaagctttcactcttgactatttctacaataaattattgaaaacatcacgtaatatgaag
gctgttttgttggatcagtctatcgtagcaggccttgggaatatttatgtggatgaagca
ctcttccgtgctggtatccatcctgaaagaatagcaaaaactttgacgaaatcagaagct
gaacaagtgcggaaagctagtatcaacgtcatattggaagccatcgatcagggtgggacc
actattcgctcttacttgaatagtcaaggggaaatcggtatgtttcaacagcagctccgt
gtctatggaaagcaagatcgagagtgctttaattgcggtaccggcattacgaagcttaaa
gtgagcgggcgcggtacacatatttgtccgcaatgtcagccattacacattcccaggtaa
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