Halobellus limi: DV707_08155
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Entry
DV707_08155 CDS
T05944
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hlm
Halobellus limi
Brite
KEGG Orthology (KO) [BR:
hlm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hlm03016
]
DV707_08155
Enzymes [BR:
hlm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DV707_08155
Transfer RNA biogenesis [BR:
hlm03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DV707_08155
Prokaryotic type
tRNA splicing ligases
DV707_08155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QCC47633
UniProt:
A0A1H6ALL0
LinkDB
All DBs
Position
complement(1639389..1640912)
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AA seq
507 aa
AA seq
DB search
MSDHDDPEVLEYNGVRLERVREHVWEIPREGGMNVPARVLASEALLEQIGDDKTLQQLRN
ATHLPGIADRAICMPDGHQGYGFPVGGVGATDVETGCISPGAIGYDINCGVRMMRTNLTY
DDVVGHEEELVDALFANVPSGLGGGGIVESDRDTLESILNRGVDWALEHGYAVEDDLAHC
EDEGMRPDADPDAVSQKAKDRGKNQVGSLGSGNHFLEVQRVTDIFRPEVATEFGLEADQI
VVLIHCGSRGLGHQICTDYLREIEREHGDLLAELPDKELAAAPAGSQLAEEYYGAMCAAI
NFAWVNRQLIMHRTRRVFERVFERDWESMEMELLYDVAHNIGKKEVHEVGVDADGRPAAP
DEAVDRAERELYVHRKGATRAFPAGRPELPAAYRDVGQPIIIPGSMGAGSYVLRGGEESM
AVSFGSTAHGAGRTMSRTQAKNEYWGETVQEELRDQEQIYVKAQSGATVAEEAPGVYKSV
DEVVRVSDELGIGDKVARTFPVCNIKG
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgagcgatcacgacgaccccgaggtcctcgagtacaacggcgtccgcctcgaacgggtc
cgcgagcacgtctgggagatcccccgcgaaggcggaatgaacgtccccgcacgagtgctc
gcgagcgaggcgctgctcgaacagatcggcgacgacaagaccctccagcagctccggaac
gcgacgcacctcccggggatcgcagaccgcgcgatctgtatgcccgacggccaccagggc
tacgggttccccgtcggcggcgtcggcgcgacggacgtcgagaccggctgcatctcgccg
ggcgcgatcggctacgacatcaactgcggcgtcaggatgatgcggacgaacctgacctac
gacgacgtcgtcggtcacgaggaggaactcgtcgacgcgctcttcgcgaacgtgccgtcg
ggactcggcggcggcggcatcgtcgagtccgaccgcgacacgctcgaatcgatcctgaac
cggggcgtcgactgggcgctcgaacacggctacgccgtcgaggacgacctcgcccactgc
gaggacgaggggatgcgtcccgacgccgaccccgacgcggtctctcagaaggccaaggac
cgcgggaagaaccaggtcgggagcctcggctccgggaaccacttcctggaggtgcagcgc
gtcaccgacatcttccgaccggaggtcgcgacggagttcggactcgaagccgatcagatc
gtcgtgctgatccactgcgggtcccgcggcctcggtcaccagatctgcacggactacctc
cgagagatcgaacgggaacacggcgacctcctcgcggagctgcccgacaaggaactggcg
gccgcgccggcgggctcgcagttggccgaggagtactacggcgcgatgtgcgcggcgatc
aacttcgcgtgggtgaaccgacagctcatcatgcaccggacccggcgcgtcttcgagcgc
gtcttcgagcgggactgggagtcgatggagatggaactgctctacgacgtcgcgcacaac
atcgggaagaaggaagtccacgaggtcggcgtcgacgccgacgggcgtcccgcggctccc
gacgaagcagtggatcgagcggagcgagagctctacgtccaccggaagggagcgacgcgc
gccttcccggccggccgaccggagctaccggccgcctaccgcgacgtgggacagccgatc
atcatccccggcagcatgggggcgggctcgtacgtcctccgcggcggcgaggagtcgatg
gcggtgtccttcggctcgacggcgcacggcgcgggacggacgatgagtcggacgcaggcg
aagaacgagtactggggcgagacggtccaggaggaactccgcgaccaggagcagatctac
gtgaaggcccaatcgggcgcgacggtcgccgaggaggccccgggcgtctacaagagcgtc
gacgaggtcgtccgcgtctccgacgaattagggatcggcgacaaggtcgcccggacgttc
cccgtctgcaacatcaagggctga
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