Haloferax volcanii SVX82: SVXHx_0038
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Entry
SVXHx_0038 CDS
T08885
Symbol
ding
Name
(GenBank) Rad3-related DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
hln
Haloferax volcanii SVX82
Pathway
hln03022
Basal transcription factors
hln03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hln00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
SVXHx_0038 (ding)
09124 Replication and repair
03420 Nucleotide excision repair
SVXHx_0038 (ding)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hln03021
]
SVXHx_0038 (ding)
03036 Chromosome and associated proteins [BR:
hln03036
]
SVXHx_0038 (ding)
03400 DNA repair and recombination proteins [BR:
hln03400
]
SVXHx_0038 (ding)
Enzymes [BR:
hln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
SVXHx_0038 (ding)
Transcription machinery [BR:
hln03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
SVXHx_0038 (ding)
Chromosome and associated proteins [BR:
hln03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
SVXHx_0038 (ding)
DNA repair and recombination proteins [BR:
hln03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
SVXHx_0038 (ding)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ResIII
ATPase
nSTAND3
AAA_16
AAA_22
AAA_25
AAA_34
HBB
SecA_DEAD
TrwB_AAD_bind
T2SSE
PhoH
Motif
Other DBs
NCBI-ProteinID:
WEL24373
LinkDB
All DBs
Position
complement(37642..39846)
Genome browser
AA seq
734 aa
AA seq
DB search
MAHANGAPDDGDADGAWRFFPYDEPYPNQEAAMSGIADALGDERNVLLEGATGTGKTISA
LVPALSYAREHDKTVVITTNVHQQMRQFVEDARAITREEAIRAVVFRGKSSMCHIDVGFQ
ECQTLRDTTRSIVEKESDKAELSEQAQSLLDGMREGESGAADARSAVTDELDAIDDELAE
LKEGNYCEHYYNNLTRNTDEFFQWLFDDVRTPDEIFEYAGKQNLCGYELLKEGMEGIDLV
VCNYHHLLDPMIREQFFRWLDRDPDDVITVFDEAHNIEGAARDHASRALTENTLESAMTE
LEDEDDSRAESARNVIGTFLDALRDSYESAFGFGEREQVGENWYDLSIASQGRRDDLTME
FLQSYEGRGIDVEVELALQLGKQLDEQYEDAYKNGEATTRKECQTLQAANFIADWTELGD
ELGRHPMLSVRRDGGTDEIYGRAELYTCIPREVTKELFEEVHASILMSATLRPFDVTEST
LGLDDPVTMAYGLEYPEENRRTFSVSLPALFSSERDDPGTQETVEEVLADAAGFTPGNTL
AFFPSYAEAERYHERLRANPNVDAELFLDEPGVRAEEMRREFVAEDGAVLLTSLWGTLAE
GVSFDGDDARTVVVVGVPYPHLSERLEAVQDAYDRVYRRKKDAGWRYAVEIPTIRKTRQA
LGRVIRAPDDFGVRVLADKRYTRESTSMGKYGVRGSFPVEERSEMVDIAPNKLKFAMLNF
YTDHDAYDGDPPRP
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
gtggcccacgccaacggcgcacccgacgacggcgacgcggacggagcgtggcggttcttc
ccgtacgacgagccgtaccccaatcaggaggcggcgatgtccggcatcgccgacgcgctc
ggcgacgagcggaacgtcctcctcgaaggggcgaccgggaccgggaagacaatctccgcg
ctcgtgcccgcgctctcgtacgcccgcgagcacgacaagacggtcgtcatcacgacgaac
gtccaccagcagatgcgccagttcgtcgaggacgcccgcgccatcaccagagaggaggcc
atccgcgcggtggtgttccgcgggaagtcttcgatgtgccacatcgacgtgggttttcag
gagtgtcagaccctccgcgatacgacccggagcatcgtcgaaaaggagtccgacaaggcc
gaactctccgagcaggcgcagtcgctcctcgacgggatgcgcgagggggaatccggcgcg
gccgacgcgcgaagcgccgtcacggacgaactcgacgccatcgacgacgagttggcggag
ttgaaggagggcaactactgcgagcactactacaacaacctcacgcggaacacagacgag
ttcttccagtggctgttcgacgacgtgcggacgcccgacgagattttcgagtacgcgggc
aagcagaacctctgcggctacgaactgctcaaggagggcatggagggcatcgacctcgtc
gtctgcaactaccaccacctgctcgacccgatgatacgcgagcagttcttccggtggttg
gaccgcgaccccgacgacgtgattacggtgttcgacgaggcgcacaacatcgagggcgcg
gcccgcgaccacgcgagtcgcgcgctcaccgagaacacgctcgaaagcgcgatgaccgag
ttggaagacgaagacgactcgcgggccgagagcgcccgcaacgtcatcggaacgttcctc
gacgcgctgcgcgacagctacgaatcggcgttcggcttcggcgagcgcgagcaggtcggt
gagaactggtacgacctctctatcgccagtcagggtcgccgcgacgacctgacgatggag
ttcctacaatcctacgagggccgcggcatcgacgtggaggtcgaactcgcgctccagttg
ggcaagcagttagacgagcagtacgaagacgcgtacaagaacggcgaggcgacgacgcgc
aaggagtgccagacgctccaggcggcgaacttcatcgctgactggacggagttgggcgac
gaactcggccgccacccgatgctgtcggtccgccgcgacggcggcaccgacgagatttac
ggccgcgcggaactgtacacctgtatcccgcgggaggtcacgaaggagctgttcgaggag
gttcacgcgagcatcctgatgtcggcgacgctccgcccgttcgacgtgacggaaagcacg
ctcggcctcgacgacccggtgacgatggcctacggcctcgaataccccgaggagaaccgc
cggacgttttcggtctcgctgcccgcgctgttctcctccgagcgcgacgaccccggcaca
caggagacggtcgaggaggtgctcgcggacgccgccggcttcacgcccgggaacacgctc
gcgttcttcccgtcgtacgccgaggccgagcgctaccacgagcgcctgcgggcgaacccg
aacgtcgacgcggagctgtttttagacgaaccgggcgtccgcgccgaggagatgcgccgg
gagttcgtcgccgaggacggcgcggtgcttctcacctcgctgtgggggacgctcgcggag
ggggtgagcttcgacggcgacgacgcccgaacggtcgtggtcgtcggcgtaccctacccg
catctctccgagcgattggaggcggtacaggacgcctacgaccgcgtctaccgtcggaaa
aaggacgccggctggcgctacgccgtcgagattccgacgattcgaaagacccgacaggcg
ctcggccgggtcatccgcgcgcccgacgacttcggcgtccgcgtgctggccgacaagcgg
tacacccgcgagagcacctcgatggggaagtacggcgtccgcgggtcgttcccggtcgag
gaacgctccgagatggtcgatatcgcgccgaacaaactcaagttcgcgatgctgaacttc
tacaccgaccacgacgcctacgacggcgacccgccgcggccctga
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