Haloferax volcanii SVX82: SVXHx_0071
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Entry
SVXHx_0071 CDS
T08885
Symbol
recJ
Name
(GenBank) Single-stranded DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hln
Haloferax volcanii SVX82
Pathway
hln03410
Base excision repair
hln03430
Mismatch repair
hln03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hln00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SVXHx_0071 (recJ)
03430 Mismatch repair
SVXHx_0071 (recJ)
03440 Homologous recombination
SVXHx_0071 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hln03400
]
SVXHx_0071 (recJ)
DNA repair and recombination proteins [BR:
hln03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
SVXHx_0071 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
SVXHx_0071 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SVXHx_0071 (recJ)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH_CID
DHHA1
DHH
DUF6003
Motif
Other DBs
NCBI-ProteinID:
WEL24406
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All DBs
Position
complement(74575..76005)
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AA seq
476 aa
AA seq
DB search
MDGPVPELTEHAAACAARLRDADRVLLASHIDADGLTSAGIASTALERADIPFETVFCRQ
LDEAAVADIAATDYDTVLFTDFGSGQLDIIADHEASGDFHPVIADHHQPAEGVETDHHLN
PLRFGLNGASELSGAGASYVLARALEPDAGDNRDLAALAVVGAVGDMQDTNGELRGANAG
IVDEGVEVGVVEEGTDLRIYGRQTRALPKLLQYATDVRIPGISNNEAGAIEFLTELDVPC
RDDDGEWKRWVDLTGDERQTLASALMRRAIASGVPASRIDDLVGTTYVLSREREGTELRD
VSEFSTLLNATARYDRADVGLAVCLGERDAALDRARRLLRNHRKNLSNGLQWVKEHGVRV
EDNLQWFDAGDEIRETIVGIVAGMAVGTDATRSGIPVLAFAEKEDGEVKVSSRGSYVMVR
DGLDLSAVMREASRAVGGDGGGHDVAAGATIPKGEVEAFIAEADRIVGEQLAEDAD
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atggacggacccgtccccgaactcacagagcacgcggcggcctgcgcggcccgcctccgc
gacgccgaccgggtgctcctcgcctcgcacatcgacgccgacgggttgacgagcgccggc
atcgcctcgaccgcgctcgaacgcgccgacatccccttcgagacggtgttctgccgccaa
ctcgacgaagccgccgtggccgacatcgcggcgaccgactacgacaccgtgctgttcacg
gacttcggcagcggccaactcgacatcatcgccgaccacgaggcgtcgggcgacttccac
cccgtcatcgccgaccaccaccagcccgccgagggcgtcgagaccgaccaccacctcaac
ccgctccggttcggtctcaacggcgcgagcgaactctccggcgcgggcgcgagctacgtc
ctcgcgcgggcgctcgaacccgacgccggcgacaaccgcgacctcgccgccctcgccgtc
gtcggcgcggtcggggacatgcaggacacgaacggcgaactccgcggggccaacgcgggc
atcgtcgacgagggcgtcgaagtcggcgtcgtcgaggagggcaccgacctccgcatctac
ggccgccagacccgcgcgctcccgaaactgctccagtacgcgacggacgtacgcatcccc
ggcatctcgaacaacgaggccggagccatcgagttcctgaccgaactcgacgtgccctgc
cgcgacgacgacggcgagtggaagcggtgggtcgacctcaccggcgacgagcgccagacg
ctcgccagcgccctaatgcgccgcgccatcgccagcggcgtgcccgcctcccgcatcgac
gacctcgtggggacgacctacgtgctctctcgggagcgggaggggaccgaactccgcgac
gtaagcgagttctcgacgctcctgaacgcgaccgcgcgctacgaccgcgcggacgtgggc
ctcgcggtctgtctcggcgagcgcgacgcggcgctcgaccgggcgcgcaggctcctgcga
aaccaccgcaagaacctctcgaacggccttcagtgggtgaaggaacacggcgtccgcgtc
gaggacaacctccagtggttcgacgcgggcgacgagatacgcgagaccatcgtcggcatc
gtcgccgggatggccgtcggcaccgacgcgacccgaagcgggattcccgtcctcgcgttc
gccgagaaagaagacggcgaagtgaaggtctcctcgcgcgggtcgtacgtgatggtcaga
gacggcttggacctctcggcggtcatgcgcgaggcgtcgcgggcggtcggcggcgacggc
ggcggccacgacgtggccgcgggcgcgacgattccgaagggcgaagtcgaggcgttcatc
gccgaggcagaccgcatcgtcggcgagcagttggccgaggacgcggactaa
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