Haloferax volcanii SVX82: SVXHx_0109
Help
Entry
SVXHx_0109 CDS
T08885
Symbol
ligt
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
hln
Haloferax volcanii SVX82
Brite
KEGG Orthology (KO) [BR:
hln00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hln03016
]
SVXHx_0109 (ligt)
Enzymes [BR:
hln01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
SVXHx_0109 (ligt)
Transfer RNA biogenesis [BR:
hln03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
SVXHx_0109 (ligt)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Motif
Other DBs
NCBI-ProteinID:
WEL24444
LinkDB
All DBs
Position
108108..108662
Genome browser
AA seq
184 aa
AA seq
DB search
MRCFLAVDLPDSLAAGVAAVQDRLSDADGLRFTDPESAHVTLKFLGEVSPDRVGAVEDAV
ESAVDAAGVGPFDASVDGLGVFPSLDYIRVVWLGVDDGAAELTRLHEAIERETTALGFDP
EDHEFTPHVTLARMDDARGKDLVRRVVGGESPTVGSFRVREVRLKKSDLGPDGPEYETVA
RVSL
NT seq
555 nt
NT seq
+upstream
nt +downstream
nt
atgcgttgctttctcgccgtcgacctccccgactcgctcgcggcgggcgtcgccgcggta
caagaccggctctcggacgcggacgggcttcggttcaccgaccccgagagtgcgcacgtc
accctgaagttcctcggcgaggtgtcgccggaccgcgtcggagcggtggaagatgcggtc
gaatcggccgtcgacgccgccggcgtcggccccttcgacgcctcggtcgacgggctgggc
gtctttccctcgctcgactacatccgggtcgtctggctcggcgtcgacgacggcgcggcc
gagttgacgcggctccacgaggccatcgagcgcgagacgacggcactcggcttcgacccc
gaagaccacgagttcacgccgcacgtcacgctcgcccgcatggacgacgcccgcgggaag
gacctcgtgcggcgcgtcgtcgggggtgagtcaccgacggtcgggtcgtttcgcgtgcgc
gaggtacgcctgaagaagagcgacctcggccccgacggccccgagtacgagacggtggcg
cgggtctcgctgtga
DBGET
integrated database retrieval system
