Haloferax volcanii SVX82: SVXHx_0477
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Entry
SVXHx_0477 CDS
T08885
Symbol
rpa1-2
Name
(GenBank) Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit
KO
K07466
replication factor A1
Organism
hln
Haloferax volcanii SVX82
Pathway
hln03030
DNA replication
hln03420
Nucleotide excision repair
hln03430
Mismatch repair
hln03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hln00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SVXHx_0477 (rpa1-2)
03420 Nucleotide excision repair
SVXHx_0477 (rpa1-2)
03430 Mismatch repair
SVXHx_0477 (rpa1-2)
03440 Homologous recombination
SVXHx_0477 (rpa1-2)
03460 Fanconi anemia pathway
SVXHx_0477 (rpa1-2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hln03000
]
SVXHx_0477 (rpa1-2)
03032 DNA replication proteins [BR:
hln03032
]
SVXHx_0477 (rpa1-2)
03400 DNA repair and recombination proteins [BR:
hln03400
]
SVXHx_0477 (rpa1-2)
Transcription factors [BR:
hln03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
SVXHx_0477 (rpa1-2)
DNA replication proteins [BR:
hln03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
SVXHx_0477 (rpa1-2)
DNA repair and recombination proteins [BR:
hln03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
SVXHx_0477 (rpa1-2)
MMR (mismatch excision repair)
SVXHx_0477 (rpa1-2)
DSBR (double strand breaks repair)
HR (homologous recombination)
SVXHx_0477 (rpa1-2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_anti-codon
CDC24_OB3
REPA_OB_2
Ssb-like_OB
SSB
DUF5666
HROB
Motif
Other DBs
NCBI-ProteinID:
WEL24801
LinkDB
All DBs
Position
431523..432995
Genome browser
AA seq
490 aa
AA seq
DB search
MGVIREVYDDLDTDVEFEEFEAAVNDKVEQMGGLADEETAAMLIAHELRDEEVNGIADIE
PGMEDVKFLAKVVSIGEVRTFERDGEDEDGRVVNIEVADETGRIRVSLWDEMAAGAKENL
EVGTVLRIGGRPKDGYNGVEVSASKVEEDLDAEVDVQVLDSYRVEDLALGLSDVNLEGKI
LDAGTVRTFDRDDGTEGRVSNLSVGDPTGRVRVTLWDERADLAEELEPGQSVEVVDGYVR
ERDGSLELHVGSRGAVEPIDEDIEYVPETTDIGSLELGQTVDIAGGVIEADGKRTFDRDD
GSEGQVRNIRVKDGTGDIRVALWGEKADADVDLADYVVITDAEIKEGWQEDLEASAGWRS
SVAVMDEAPEGAAGTDAGDSGPTPPSDQGLGAFSGDGSSGGSSGSSDDTSAANGGSSSDA
SAAESAGEAVEFTGTVVQAGTPVILDDGTQTKTVDTDADLGLGDEVTVSGTETDGRISAE
SVEVHTGAQQ
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgggcgtcatccgggaggtctacgacgacctcgacaccgatgtcgagttcgaggagttc
gaagcggcggtcaacgacaaggtcgaacagatgggcggcctcgccgacgaggagacggcg
gcgatgctcatcgcccacgaactgcgcgacgaggaggtcaacggcatcgccgacatcgaa
cccggcatggaggacgtgaagttcctcgccaaggtcgtcagcatcggcgaggtgcggacg
ttcgagcgcgacggcgaggacgaagacgggcgggtcgtcaacatcgaggtcgccgacgag
accggtcgcatccgcgtctcgctgtgggacgagatggccgccggcgcgaaggagaacctc
gaagtcggcaccgtcctccgcatcggcggtcgcccgaaggacggctacaacggcgtcgaa
gtcagcgccagcaaggtcgaagaggacctcgacgccgaggtcgacgtgcaggtgctcgat
agctaccgcgtcgaggacctcgcgctcggcctctcggacgtgaacctcgaaggcaagatt
ctcgacgccggcaccgtgcgaacgttcgaccgcgacgacggcaccgagggccgcgtctcg
aacctctcggtcggtgatccgaccggtcgcgtccgcgtcacgctctgggacgagcgggcg
gacctcgccgaagaactcgaacccggccagtcggtcgaggtcgtcgacggctacgtccgc
gagcgcgacggctcgctcgaactccacgtcggctcccgcggcgcggtcgaacccatcgac
gaggacatcgagtacgtccccgagacgaccgacatcggctcgctcgaactcggtcagacg
gtggacatcgccggcggcgtcatcgaggcagacgggaaacgcaccttcgaccgcgacgac
ggctccgaggggcaggtccgaaacatccgcgtcaaggacggcaccggcgacatccgggtc
gccctctggggcgagaaagccgacgccgacgtggacctcgcggactacgtcgtcatcacc
gacgcggagataaaagagggctggcaggaggacctcgaagcctccgccggctggcggtcg
tccgtcgccgtgatggacgaggcacccgagggcgcggccggcaccgacgccggcgattcg
gggccgacgccgccgagcgaccagggcctcggcgcgttctccggcgacgggtcgtccggt
ggctcgtccgggtcgtccgacgacacgtccgccgcgaacggcgggtcctcgtcggacgcg
tccgcggccgagtccgccggcgaggcggtcgagttcaccgggacggtcgtacaggccgga
acgccggtcatcctcgacgacggcacgcagaccaagaccgtcgacaccgacgccgacctc
ggcctcggtgacgaggtgaccgtctccgggacggagaccgacggccgcatcagcgccgag
tcggtcgaagtccacactggcgcacagcagtag
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