Haloferax volcanii SVX82: SVXHx_0641
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Entry
SVXHx_0641 CDS
T08885
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
hln
Haloferax volcanii SVX82
Brite
KEGG Orthology (KO) [BR:
hln00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hln03032
]
SVXHx_0641 (topA)
03400 DNA repair and recombination proteins [BR:
hln03400
]
SVXHx_0641 (topA)
Enzymes [BR:
hln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
SVXHx_0641 (topA)
DNA replication proteins [BR:
hln03032
]
Prokaryotic type
DNA Topoisomerases
SVXHx_0641 (topA)
DNA repair and recombination proteins [BR:
hln03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SVXHx_0641 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
HHH_5
DNA_pol_lambd_f
Cdd1
DUF4332
HHH
IMS_HHH
DUF1272
DUF7129
DUF7575
Motif
Other DBs
NCBI-ProteinID:
WEL24961
LinkDB
All DBs
Position
complement(589167..591689)
Genome browser
AA seq
840 aa
AA seq
DB search
MSRGPELIITEKDNAARRIADILSGETASAERMNGVNVYKWGGKRCIGLSGHVVGVDFPP
EYNDWRDVEPVELIGAPVEKHPTQENIVAALRRLARRAGKVTIATDYDREGELIGKEAYE
LVRDVNEDVPVDRVRFSSITNREVTEAFENPDDLDFDLAAAGEARQIIDLVWGAALTRFL
SLSARQLGNDFISVGRVQGPTLKLIVDREREIDAFDPEDYWELFSKLTKDADGDAESFEA
QYFYLDDDGTEAERIWDEDDAEEAYQTLLGVEAAEVSSVNRRTRTDTPPAPFNTTQFIRA
AGSIGYSAQRAMSIAEDLYTAGYITYPRTDNTVYPDDLDPRELLGAFEGDRRFKEDAESL
LEQEEIEPTEGDNETTDHPPIHPTGELPSASDLSDDEWDVYELVVRRFFATVAEDAVWEH
LRVVAEVEGLSLKANGKRLLEAGYHDVYPYFNSSESFVPDVEEGESLVLSDTHLDAKQTQ
PPRRYGQSRLIETMEQMGIGTKATRHDVIQKLYDRGYIESDPPRPTRLARAVVEASEDFA
KLIVSEEMTSQLESDMLAIARGEATLEDVTEESKEMLGEVFEGLMESREELGKQLQDSLK
ADKTVGTCPDCGGDLVVRKSRRGSYFIGCDSYPDCTYTLPLPSTGKPLIMEESCEDHDLH
HIKMLAGRKTFVHGCPLCKAEEADEEDDLVIGTCPECGEEHDGELAIKRLRSGSRLVGCT
RYPDCDYSLPLPRRGDIEVTDESCEEHDLPELRITYEGDREPWELGCPICNYREYQAQQN
GEGGSELESINGIGAKTAEKLKDAGIEDVKTLKASEPDDIAAKVEGVGADTVRKWQTAAD
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
atgagcaggggtccggaactcatcatcacggagaaggacaacgccgcgaggcgcatcgcc
gacatcctgagcggcgagaccgcctccgcggagcgaatgaacggcgtgaacgtctacaag
tggggcggcaagcgctgtatcgggctgtcgggccacgtcgtcggcgtggacttcccgccg
gagtacaacgactggcgcgacgtggagccggtcgaactcatcggcgcgcccgtcgagaaa
caccccacgcaggagaacatcgtcgccgcgctccgccggctcgcccgccgcgcgggaaag
gttaccattgcgaccgactacgaccgcgagggcgaactcatcggcaaggaggcgtacgaa
ctcgtccgcgacgtcaacgaggacgtgcccgtcgaccgcgttcggttttcctcgattacg
aaccgcgaggtgacggaggcgttcgagaaccccgacgacctcgacttcgacctcgccgcc
gcgggcgaggcccgacagattatcgacctcgtctggggggcagcgctcacgcgcttcctc
tcgctttcggcccgccagctcggcaacgacttcatatcggtcggccgcgtgcaggggccg
acgctgaaactcatcgtcgaccgcgagcgcgaaatcgacgcgttcgaccccgaagactac
tgggagctgttctccaaactgacgaaggacgccgacggcgacgccgagtcgttcgaggcg
cagtacttctatctcgacgacgacggcaccgaagccgagcgcatctgggacgaagacgac
gcggaggaagcctaccagacgctcctcggcgtcgaggccgccgaggtctcgtcggtcaac
cgccgcacgcggaccgacacgccgcccgccccgttcaacaccacgcagttcatccgggcc
gccggctctatcggctactccgcccagcgggcgatgagcatcgccgaggacctctacacg
gccggttacatcacttacccgcggaccgacaacacggtgtaccccgacgacctcgacccg
cgcgaactgctcggcgcgttcgagggcgaccgccggttcaaggaggacgccgaatccctc
ctcgaacaggaggaaatcgagccgaccgagggcgacaacgagacgaccgaccacccgccg
attcacccgaccggcgaactcccctcggcgtccgacctctcagacgacgagtgggacgtg
tacgaactcgtcgtccggcgcttcttcgccaccgtcgccgaggacgccgtctgggagcac
ctccgcgtcgtcgccgaggtcgaggggctctcgctgaaggcaaacggcaagcgcctgctc
gaagccggctaccacgacgtgtacccgtacttcaactccagcgagtcgttcgtgccggac
gtcgaggaaggcgagtcgctcgtgctgtccgacacgcacctcgacgccaagcagacccag
cccccgcggcgctacggccagtcgcggctcatcgaaacgatggaacagatgggcatcggg
acgaaggcgacccgccacgacgtgattcagaagctctacgaccgcggctacatcgagagc
gacccgccgcgaccgacccgcctcgcgcgggccgtcgtggaggcctccgaggacttcgcg
aagctcatcgtcagcgaggagatgacctcgcaactcgaatccgatatgctggctatcgcc
cgcggcgaagccaccctcgaagacgtgaccgaggagtccaaagagatgctcggagaggtg
ttcgaggggctgatggagtcccgcgaggaactcggcaagcagctccaagactcgctgaag
gccgacaagacggtcggcacctgcccggactgcggcggcgacctcgtcgtcagaaagagc
cgtcgcggctcgtacttcatcggctgtgactcctacccagactgcacttacacgctgccg
cttccctccacggggaagccgctcatcatggaagagtcctgcgaggaccacgacctccac
cacatcaagatgctcgccgggcgcaagacgttcgtccacggctgtccgctctgtaaggcc
gaggaggccgacgaggaagacgacctcgtcatcgggacgtgtcccgagtgcggcgaagaa
cacgacggcgaactcgccatcaagcgcctccgctccggctcccggctcgtcggctgtacc
cgctaccccgactgcgactactcgctgccgctaccccgtcgcggcgacatcgaggtgacg
gacgagtcctgcgaggaacacgacctgcccgaactccggattacgtacgagggcgaccgc
gagccgtgggaactcggctgtcccatctgtaactaccgcgagtaccaagcccagcagaac
ggcgagggcggttccgagttagagagcatcaacggcatcggcgcgaagaccgccgagaaa
ctgaaagacgccggtatcgaggacgtgaagacgctgaaggcgtccgaacccgacgacatc
gcggcgaaagtcgaaggcgttggtgcggatacggttcggaagtggcagacggcggcggat
taa
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