Haloferax volcanii SVX82: SVXHx_1513
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Entry
SVXHx_1513 CDS
T08885
Symbol
lig
Name
(GenBank) ATP-dependent DNA ligase
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
hln
Haloferax volcanii SVX82
Pathway
hln03030
DNA replication
hln03410
Base excision repair
hln03420
Nucleotide excision repair
hln03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hln00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SVXHx_1513 (lig)
03410 Base excision repair
SVXHx_1513 (lig)
03420 Nucleotide excision repair
SVXHx_1513 (lig)
03430 Mismatch repair
SVXHx_1513 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hln03032
]
SVXHx_1513 (lig)
03400 DNA repair and recombination proteins [BR:
hln03400
]
SVXHx_1513 (lig)
Enzymes [BR:
hln01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SVXHx_1513 (lig)
6.5.1.6 DNA ligase (ATP or NAD+)
SVXHx_1513 (lig)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
SVXHx_1513 (lig)
DNA replication proteins [BR:
hln03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
SVXHx_1513 (lig)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
SVXHx_1513 (lig)
DNA repair and recombination proteins [BR:
hln03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
SVXHx_1513 (lig)
NER (nucleotide excision repair)
Other NER factors
SVXHx_1513 (lig)
MMR (mismatch excision repair)
Other MMR factors
SVXHx_1513 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
WEL25823
LinkDB
All DBs
Position
1405964..1407721
Genome browser
AA seq
585 aa
AA seq
DB search
MQFAEFAARAAEIEAEPADLAVVSLLSDLFSDAGDDLPTVARFVQGRVFPAWDSTTLDIG
PRLCHEAIARAAGPNVSADDVEDRLADRGEIGAVAASYDFGGQRGLAAFGSGEQDGLTVA
EVDSELRALAAASGSGSEETKLKTLYGLFNRTDPDEARFLARLVLSEMRIGVGEGTVRDA
VAEAFLVAPADAAAIRDDDADAETEAAARERRNEAIAAVARALQVSNDYGMVAGLARDEG
EAGLDGVRLEVGRPVQAMLAQAGTAADALDEWGTAAVETKFDGARVQVHRDADGEVSLFS
RNMEDVTDALPEVVEFVAGAVDDPVILDGEVVAMDDGGEPLPFQEILRRFRRKHDVDRMR
EEVRVELRAFDCLHAAGDDLLADPLAARHDRLTALLGDDSPAVSDLLLSDDPDEIAAYEA
DALDAGHEGIMLKNPDAPYSPGDRGKNWLKRKPDVETLDLVVTGAEWGEGRRAEFLGTFL
LSARVEAESGDDAFETIGKVATGITDEELAELTDLLEPEIEREAGKEVDIRPSVVFEVGY
EEIQASPTYSSGYALRFPRFVTVREDKTAETADSLDRVERLADSQ
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atgcagttcgccgagttcgccgcccgcgccgccgagatagaagccgagccagcggacctc
gcggtcgtctcgctcctctcagacctcttttccgacgccggcgacgacctcccgacggtc
gcccggttcgtccaaggtcgcgtcttcccggcgtgggactcgaccacgctcgacatcggc
ccgcggctctgccacgaggccatcgcccgcgccgccggcccgaacgtctccgccgacgac
gtggaagaccgactcgccgaccgcggcgaaatcggcgcggtcgccgcgagctacgacttc
ggcggccagcgcggcctcgccgccttcggctcgggcgaacaggacggcctgaccgtcgcc
gaagtcgattcggagctccgcgccctcgcggccgcctccggctccggcagcgaggagaca
aagctcaagacgctctacggcctgttcaaccggaccgaccccgacgaggcgcgcttcctc
gcgcggctcgtcctctccgagatgcgcatcggcgtcggcgagggaaccgtccgcgacgcc
gtcgcggaggcgttcttggtcgcccccgcggacgccgccgccatccgcgacgacgacgcc
gacgcggagaccgaagccgccgcccgcgagcgcagaaacgaggccatcgccgccgtcgcc
cgcgccttgcaggtgtcgaacgactacggcatggtcgccggactcgcccgcgacgagggc
gaagccgggctcgacggggttcgcctcgaagtgggccgccccgtgcaagcgatgctggca
caggccggcaccgccgccgacgcgctcgacgagtggggaaccgccgcggtcgagaccaag
ttcgacggcgcgcgcgtgcaggtccaccgcgacgccgacggcgaggtgtcgctgttttcg
cgcaacatggaggacgtgaccgacgcgctccccgaggtggtcgagttcgtcgccggcgcg
gtcgacgaccccgtcatcctcgacggcgaggtcgtggcgatggacgacggcggcgagccc
ctgccgtttcaggagattctccgtcgcttccgccgaaaacacgacgtagaccggatgcgc
gaggaggtccgggtcgaactccgggcgttcgactgcctgcacgccgccggcgacgacctc
ctggccgacccgcttgccgcccgccacgaccgactgaccgcgctcctcggtgacgactca
ccggccgtctcggacctgctcctctcggacgaccccgacgaaatcgccgcctacgaggcc
gacgccctcgacgccggccacgagggtatcatgctgaagaaccccgacgcgccgtactcg
ccgggcgaccgcgggaagaactggctgaagcgcaagcccgacgtggagacgctggacctc
gtcgtcaccggcgcggagtggggcgagggtcgccgcgcggagttcctcgggacgttcctg
ctttcggcccgcgtcgaagccgagtccggggacgacgccttcgagaccatcggcaaggtc
gccacgggcatcaccgacgaggagttggccgagttgaccgacctcctcgaacccgaaatc
gaacgcgaggcgggcaaggaggtcgacatccgcccgtcggtcgtcttcgaagtcggctac
gaggagattcaggcctcgccgacgtactcctcgggctacgcgcttcggttcccgcggttc
gtcaccgtccgcgaggacaagaccgccgagacggccgactcgctggaccgcgtggagcga
ctggccgactcgcagtga
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