KEGG   Haloferax volcanii SVX82: SVXHx_1746
Entry
SVXHx_1746        CDS       T08885                                 
Symbol
fen1
Name
(GenBank) 5'-3' exonuclease
  KO
K04799  flap endonuclease-1 [EC:3.1.-.-]
Organism
hln  Haloferax volcanii SVX82
Pathway
hln03030  DNA replication
hln03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:hln00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SVXHx_1746 (fen1)
   03410 Base excision repair
    SVXHx_1746 (fen1)
   03450 Non-homologous end-joining
    SVXHx_1746 (fen1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hln03032]
    SVXHx_1746 (fen1)
   03400 DNA repair and recombination proteins [BR:hln03400]
    SVXHx_1746 (fen1)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:hln04147]
    SVXHx_1746 (fen1)
DNA replication proteins [BR:hln03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    SVXHx_1746 (fen1)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     SVXHx_1746 (fen1)
DNA repair and recombination proteins [BR:hln03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     SVXHx_1746 (fen1)
Exosome [BR:hln04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   SVXHx_1746 (fen1)
SSDB
Motif
Pfam: XPG_I XPG_N 5_3_exonuc 5_3_exonuc_N
Other DBs
NCBI-ProteinID: WEL26048
LinkDB
Position
1641622..1642602
AA seq 326 aa
MGNADLRTLAALSEVSFDEVSGSVVAVDAHNWLYRYLTTTVKWTSSETYTTSEGEEVANL
VGIVQGLPKFFEHDLTPVFVFDGGVTEMKDDEVAKRREQREKAEERLEAAREAGDAAEAA
RMEARTQRLTETIQDTSRELLSLFDVPVVEAPAEGEAQASYMARTGDADYVGSEDYDTLL
FGAPYTLRQLTSKGDPELMDLDATLDKHDITHEQLVDIAMLCGTDFNEGITGIGPKTAVK
LVTEHGDLWSVLEARGDTIPNADRVREFFLDPPVTDDYDYDTDIDPDVAAAREFVTETWE
VDPEEVRRGFERIEESVTQTGLDRWT
NT seq 981 nt   +upstreamnt  +downstreamnt
atgggaaacgcagacctgcggacgctcgccgcgctctccgaggtgtcgttcgacgaggtg
tccgggagcgtcgtcgccgtcgacgcccacaactggctgtaccgctatctcacgacgacg
gtcaagtggacgagttcggagacgtacacgacgagcgagggcgaggaggtcgccaacctc
gtcggcatcgtccagggactccccaagttcttcgaacacgacctgacgcccgtcttcgtc
ttcgacggcggcgtcaccgagatgaaagacgacgaggtggccaagcgccgcgagcagcgc
gagaaggccgaagaacgcctcgaagcggcgcgtgaggcgggcgacgcggccgaggccgcc
cggatggaagcccggacccagcggctcaccgagacgattcaggacaccagccgcgaactc
ctctcgcttttcgacgtgccggtggtcgaagcgcccgccgagggcgaggcgcaggcgtcc
tacatggcccgcacgggcgatgccgactacgtgggcagcgaggactacgacaccctcttg
ttcggcgcaccctacacgctccgacagctcacgagcaagggcgaccccgagctgatggac
ctcgacgcgacgctcgacaaacacgacatcacccacgagcaactcgtcgacatcgccatg
ctctgcgggaccgacttcaacgagggcatcacgggaatcggcccgaagacggccgtgaaa
ctcgtcacggaacacggcgacctctggtcggtcctcgaagcccgcggcgacaccatcccc
aacgccgaccgggtgcgcgagttcttcttggacccgccggtcaccgacgactacgactac
gacaccgacatcgaccccgacgtggccgccgcccgcgagttcgtcaccgagacgtgggag
gtcgaccccgaggaggtccgccgcggcttcgagcgcatcgaggaatcggtcacgcagacc
ggtctcgaccgctggacgtag

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