Haloferax volcanii SVX82: SVXHx_1877
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Entry
SVXHx_1877 CDS
T08885
Symbol
rnj
Name
(GenBank) Ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
hln
Haloferax volcanii SVX82
Pathway
hln03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hln00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SVXHx_1877 (rnj)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hln03019
]
SVXHx_1877 (rnj)
Messenger RNA biogenesis [BR:
hln03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SVXHx_1877 (rnj)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
Lactamase_B
RMMBL
Motif
Other DBs
NCBI-ProteinID:
WEL26172
LinkDB
All DBs
Position
complement(1758414..1759766)
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AA seq
450 aa
AA seq
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MEIEIATIGGYEEVGRQMTAVRAGDDVVVFDMGLNLSQVLIHDNVETEKMHSLDLIDMGA
IPDDRVMSDLEGDVQAIVPTHGHLDHIGAISKLAHRYDAPVVATPFTIELVKQQIEGENK
FNVNNDLVKMEAGSTMSIGDSGQVELEFVHVTHSIIDAINPVIHTPEGAIVYGLDKRMDH
SPVLEDPIDMKRFREIGREGNGVLAYIEDCTNAGRKGRTPSESVARRHLKDVMTSVEDYD
GGIVATTFSSHISRVSSLVEFAKDIGRQPVLLGRSMEKYSGTAERLGFVDLPDDLGMYGH
RKSVDRTFKRIMKEGKENYLPIVTGHQGEPRAMLTRMGRGETPYEIDDGDKVIFSARVIP
EPTNEGQRYQSERLLRMQGARIYDEIHVSGHLREEGHYEMLQALQPQHVIPAHQNLKGFA
PYVDLAESQGYALGRDLHVTRNGNMIQLVE
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcgaaatcgcaaccataggcggatacgaagaagtcggccgtcagatgacggcc
gtccgtgccggagacgacgtcgtcgtcttcgacatgggtctcaacctgtcgcaggtcctc
atccacgacaacgtcgagaccgaaaagatgcacagcctcgacctcatcgacatgggcgct
atcccggacgaccgggtcatgagcgacctcgaaggagacgtgcaggccatcgtccccacg
cacggccacctcgaccacatcggggccatctccaagctcgcccaccgctacgacgccccc
gtcgtcgccacgcccttcaccatcgaactggtgaaacagcagatcgaaggcgagaacaag
ttcaacgtcaacaacgacctcgtcaagatggaagccgggtcgacgatgtccatcggcgac
tccggacaggtcgaactcgaattcgtccacgtcacccactccatcatcgacgccatcaac
ccggtcatccacacgcccgagggcgcaatcgtctacggcctcgacaagcgcatggaccac
tcgccggtcctcgaagaccccatcgacatgaagcgcttccgcgaaatcggccgcgagggc
aacggcgtgctcgcgtacatcgaagactgtacgaacgccggccggaagggccgcacgccc
tccgagtccgtcgcgcgccgccacctcaaagacgtgatgacctccgtcgaggactacgac
ggcggcattgtcgcgacgacgttctcgtcgcacatctcccgggtctcctcgctcgtcgag
ttcgccaaggatatcggccgccagccggtcctcctcggccgctcgatggagaagtactcc
ggcacggccgagcgcctcggcttcgtcgacctccccgacgacctcgggatgtacggccac
cgcaagtccgtcgaccgcaccttcaagcgaatcatgaaggagggcaaggagaactacctg
cccatcgtcacgggccaccagggcgagccgcgcgcgatgctcacccgcatgggccgcggc
gagacgccgtacgagattgacgacggcgacaaggtcatcttctcggcgcgggtcatcccg
gagccgacgaacgagggccagcgctaccagtccgaacgcctcctgcgcatgcagggcgcg
cgcatctacgacgagattcacgtctcgggccacctccgagaggagggccactacgagatg
ctccaggcgctccagccccagcacgtcatcccggctcaccagaacctgaaaggcttcgct
ccgtacgtggacctcgcggagagtcagggctacgccctcggtcgcgacctccacgtcacg
cggaacggcaacatgattcagctggtggagtga
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