KEGG   Haloferax volcanii SVX82: SVXHx_2234
Entry
SVXHx_2234        CDS       T08885                                 
Symbol
cdc48-3
Name
(GenBank) ATPase of the AAA class, CDC48 family
  KO
K13525  transitional endoplasmic reticulum ATPase
Organism
hln  Haloferax volcanii SVX82
Pathway
hln04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:hln00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    SVXHx_2234 (cdc48-3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hln03019]
    SVXHx_2234 (cdc48-3)
   03009 Ribosome biogenesis [BR:hln03009]
    SVXHx_2234 (cdc48-3)
   04131 Membrane trafficking [BR:hln04131]
    SVXHx_2234 (cdc48-3)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:hln04147]
    SVXHx_2234 (cdc48-3)
Messenger RNA biogenesis [BR:hln03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     SVXHx_2234 (cdc48-3)
Ribosome biogenesis [BR:hln03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    SVXHx_2234 (cdc48-3)
Membrane trafficking [BR:hln04131]
 SNARE
  SNARE associated proteins
   Others
    SVXHx_2234 (cdc48-3)
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    SVXHx_2234 (cdc48-3)
Exosome [BR:hln04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   SVXHx_2234 (cdc48-3)
SSDB
Motif
Pfam: AAA AAA_lid_3 CDC48_N AAA_16 CDC48_2 AAA_5 RuvB_N TIP49 AAA_22 AAA_33 nSTAND3 AAA_2 AAA_14 NPHP3_N IstB_IS21 AAA_28 RNA_helicase AAA_7 Sigma54_activat Mg_chelatase AAA_18 ABC_tran AAA_17 DUF815 AAA_lid_PRS2_C ATPase AAA_3 NB-ARC Zeta_toxin Parvo_NS1 SLFN-g3_helicase AAA_11 AAA_24 PhoH TsaE AAA_30 AAA_19 bpMoxR NACHT Vps4_C Zot DUF6985
Other DBs
NCBI-ProteinID: WEL26520
LinkDB
Position
2091077..2093308
AA seq 743 aa
MNEVQLEVAKAYPNDSGRGIARLDPDTLLHLKLSPGDIIEIEGGKTTAAKVWRADRQDWN
TDTVRIDGFTRQNADVGIGERVTIRKAEATKADKLVLAPPEEASVQFGSDAAGMVKRQIL
KRPVVERDIVPVMSSTNHPFMRSPGQAIPLIAVETKPEGVVLVTEDTDVELREEPISGFE
KAGGGITYEDIGGLTNEIQRVREMVELPMKHPQIFKKLGIEPPQGVLLHGPPGTGKTLLA
RAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDAKEESPSIIFIDELDSIAPKRED
VTGEVERRVVAQLLTMMDGLEARGQVIVIAATNRVDSVDPALRRPGRFDREIEIGVPDEE
GRKEILQIHTRGMPLSDDVDLDDLADDTHGFVGADIEALTKEAAMKALRRYLPEIDLDRE
DIPPSLIDRMVVKNDDFGGALGEVEPSAMREVLVEIPKVTWNDVGGLEGPKQKVQESVEW
PLTTPEKFQRMGIEAPKGVLLYGPPGTGKTLIAKAVANETNANFISVRGPQLLSKWVGES
EKAIRQTFRKARQVSPTIIFFDELDALAPARGNDMGNNVSERVVNQLLTELDGLEDAGNV
MVIAATNRPDMIDPALIRSGRFDRLVLIGQPEEEGREQILDIHTQQSPLAPDVSLREIAE
ITDGYVGSDLESICREAAIEALREDSDAEEIEMRHFRKAMESVRPTITEELMRYYEDIQD
QFKGGSREGLSPDTRDGGRIGFQ
NT seq 2232 nt   +upstreamnt  +downstreamnt
atgaacgaagtccaactcgaagtggcgaaagcgtacccgaacgactcggggcgcggtatc
gcccgtcttgatccggacaccttgctccatctcaagctctcgccgggagacatcatcgag
atcgagggaggaaaaacgaccgccgcgaaggtgtggcgggcagaccggcaggactggaac
acggatacggtccgcatcgacgggttcacgcggcagaacgccgacgtgggcatcggtgaa
cgggtcactatccgcaaagcagaggctacgaaggccgacaaactcgtgctcgcgccgccg
gaggaggcgagcgtgcagttcgggtccgacgcggccggcatggtcaaacggcagattctc
aagcgacccgtggtcgaacgcgacatcgtcccggtgatgtcgagtacgaaccatccgttt
atgcggtcgcccggacaggcgattccgctcatcgccgtcgagacgaaacccgagggcgtc
gtcctcgtcaccgaggacactgatgtcgaactccgcgaggagcccatctccggcttcgag
aaggccggcggcggcatcacctacgaggacatcggcgggctgaccaacgagattcagcgc
gtccgcgagatggtcgaactgccgatgaaacacccccagatattcaagaagctgggcatc
gagcccccgcagggggtgttgctccacgggccgccgggcaccgggaagacgctgctcgcc
cgcgcggtcgccaacgagacctcggcgagtttcttctctatcgcagggccggaaatcatc
tcgaagtactacggcgagtccgaacaacagctccgcgagatattcgaggacgccaaagag
gagtccccgagcatcatcttcatcgacgagctcgactccatcgcgcccaagcgcgaggac
gtgaccggcgaggtcgaacgccgggtcgtcgcccaactcttgacgatgatggacgggctg
gaagcccgcggacaggtcatcgtcatcgcggcgacgaaccgcgtcgactcggtggacccc
gcgctccgccgtcccggtcggttcgaccgcgaaatcgaaatcggcgttccggacgaggag
ggtcgcaaggagatcctccagattcacacccgcgggatgccgctttcggacgacgtggac
ctcgacgacctcgccgacgacacccacggcttcgtcggagcggacatcgaggcgctgacc
aaggaggccgcgatgaaggcgctgcggcgctacctccccgaaatcgatctcgacagggag
gacatccccccgagtctcatcgaccgcatggtcgtcaagaacgacgacttcggcggcgcg
ctcggcgaggtcgaaccctcggcgatgcgcgaggtgctcgtcgagattccgaaggtgacg
tggaacgacgtgggcgggctcgaagggcccaaacagaaggtccaagagagcgtcgagtgg
ccgctgacgacccccgagaagttccagcggatgggtatcgaggctccgaaaggcgtgctc
ctctacgggccgcccggcacgggtaagaccctgatagcgaaggccgtcgccaacgagacg
aacgcgaatttcatctcggtgcgtggcccgcagctgctgtcgaagtgggtcggtgagtcg
gagaaggcgattcggcagacgttccgcaaggcgcggcaggtctccccgaccatcatcttc
ttcgacgagctcgacgcgctcgccccggcccgcggcaacgacatgggcaacaacgtctcc
gagcgcgtcgtcaaccagctcctgacggagttagacggcctcgaagacgcgggcaacgtc
atggtcatcgcggcgaccaaccgcccggacatgatcgaccccgcgctcatccgctcgggc
cggttcgaccgcctcgtgctcatcggccagcccgaagaggagggccgcgagcagattctc
gacatccacacgcagcagagtccgctcgcgccggacgtgagcctccgcgaaatcgcggag
ataaccgacggctacgtcggctccgacctcgaatccatctgccgcgaggcggccatcgag
gcgctccgcgaggactccgacgccgaggaaatcgagatgcgccacttccgcaaggcgatg
gagtcggtccggccgaccatcaccgaggaactgatgcgctactacgaggacatccaagac
cagttcaaaggcggctcccgcgaggggctgtcgcccgacacccgcgacggcggccgcatc
ggcttccagtaa

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