Haloferax volcanii SVX82: SVXHx_2234
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Entry
SVXHx_2234 CDS
T08885
Symbol
cdc48-3
Name
(GenBank) ATPase of the AAA class, CDC48 family
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
hln
Haloferax volcanii SVX82
Pathway
hln04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
hln00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
SVXHx_2234 (cdc48-3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hln03019
]
SVXHx_2234 (cdc48-3)
03009 Ribosome biogenesis [BR:
hln03009
]
SVXHx_2234 (cdc48-3)
04131 Membrane trafficking [BR:
hln04131
]
SVXHx_2234 (cdc48-3)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hln04147
]
SVXHx_2234 (cdc48-3)
Messenger RNA biogenesis [BR:
hln03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
SVXHx_2234 (cdc48-3)
Ribosome biogenesis [BR:
hln03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
SVXHx_2234 (cdc48-3)
Membrane trafficking [BR:
hln04131
]
SNARE
SNARE associated proteins
Others
SVXHx_2234 (cdc48-3)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
SVXHx_2234 (cdc48-3)
Exosome [BR:
hln04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
SVXHx_2234 (cdc48-3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
CDC48_2
AAA_5
RuvB_N
TIP49
AAA_22
AAA_33
nSTAND3
AAA_2
AAA_14
NPHP3_N
IstB_IS21
AAA_28
RNA_helicase
AAA_7
Sigma54_activat
Mg_chelatase
AAA_18
ABC_tran
AAA_17
DUF815
AAA_lid_PRS2_C
ATPase
AAA_3
NB-ARC
Zeta_toxin
Parvo_NS1
SLFN-g3_helicase
AAA_11
AAA_24
PhoH
TsaE
AAA_30
AAA_19
bpMoxR
NACHT
Vps4_C
Zot
DUF6985
Motif
Other DBs
NCBI-ProteinID:
WEL26520
LinkDB
All DBs
Position
2091077..2093308
Genome browser
AA seq
743 aa
AA seq
DB search
MNEVQLEVAKAYPNDSGRGIARLDPDTLLHLKLSPGDIIEIEGGKTTAAKVWRADRQDWN
TDTVRIDGFTRQNADVGIGERVTIRKAEATKADKLVLAPPEEASVQFGSDAAGMVKRQIL
KRPVVERDIVPVMSSTNHPFMRSPGQAIPLIAVETKPEGVVLVTEDTDVELREEPISGFE
KAGGGITYEDIGGLTNEIQRVREMVELPMKHPQIFKKLGIEPPQGVLLHGPPGTGKTLLA
RAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDAKEESPSIIFIDELDSIAPKRED
VTGEVERRVVAQLLTMMDGLEARGQVIVIAATNRVDSVDPALRRPGRFDREIEIGVPDEE
GRKEILQIHTRGMPLSDDVDLDDLADDTHGFVGADIEALTKEAAMKALRRYLPEIDLDRE
DIPPSLIDRMVVKNDDFGGALGEVEPSAMREVLVEIPKVTWNDVGGLEGPKQKVQESVEW
PLTTPEKFQRMGIEAPKGVLLYGPPGTGKTLIAKAVANETNANFISVRGPQLLSKWVGES
EKAIRQTFRKARQVSPTIIFFDELDALAPARGNDMGNNVSERVVNQLLTELDGLEDAGNV
MVIAATNRPDMIDPALIRSGRFDRLVLIGQPEEEGREQILDIHTQQSPLAPDVSLREIAE
ITDGYVGSDLESICREAAIEALREDSDAEEIEMRHFRKAMESVRPTITEELMRYYEDIQD
QFKGGSREGLSPDTRDGGRIGFQ
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaagtccaactcgaagtggcgaaagcgtacccgaacgactcggggcgcggtatc
gcccgtcttgatccggacaccttgctccatctcaagctctcgccgggagacatcatcgag
atcgagggaggaaaaacgaccgccgcgaaggtgtggcgggcagaccggcaggactggaac
acggatacggtccgcatcgacgggttcacgcggcagaacgccgacgtgggcatcggtgaa
cgggtcactatccgcaaagcagaggctacgaaggccgacaaactcgtgctcgcgccgccg
gaggaggcgagcgtgcagttcgggtccgacgcggccggcatggtcaaacggcagattctc
aagcgacccgtggtcgaacgcgacatcgtcccggtgatgtcgagtacgaaccatccgttt
atgcggtcgcccggacaggcgattccgctcatcgccgtcgagacgaaacccgagggcgtc
gtcctcgtcaccgaggacactgatgtcgaactccgcgaggagcccatctccggcttcgag
aaggccggcggcggcatcacctacgaggacatcggcgggctgaccaacgagattcagcgc
gtccgcgagatggtcgaactgccgatgaaacacccccagatattcaagaagctgggcatc
gagcccccgcagggggtgttgctccacgggccgccgggcaccgggaagacgctgctcgcc
cgcgcggtcgccaacgagacctcggcgagtttcttctctatcgcagggccggaaatcatc
tcgaagtactacggcgagtccgaacaacagctccgcgagatattcgaggacgccaaagag
gagtccccgagcatcatcttcatcgacgagctcgactccatcgcgcccaagcgcgaggac
gtgaccggcgaggtcgaacgccgggtcgtcgcccaactcttgacgatgatggacgggctg
gaagcccgcggacaggtcatcgtcatcgcggcgacgaaccgcgtcgactcggtggacccc
gcgctccgccgtcccggtcggttcgaccgcgaaatcgaaatcggcgttccggacgaggag
ggtcgcaaggagatcctccagattcacacccgcgggatgccgctttcggacgacgtggac
ctcgacgacctcgccgacgacacccacggcttcgtcggagcggacatcgaggcgctgacc
aaggaggccgcgatgaaggcgctgcggcgctacctccccgaaatcgatctcgacagggag
gacatccccccgagtctcatcgaccgcatggtcgtcaagaacgacgacttcggcggcgcg
ctcggcgaggtcgaaccctcggcgatgcgcgaggtgctcgtcgagattccgaaggtgacg
tggaacgacgtgggcgggctcgaagggcccaaacagaaggtccaagagagcgtcgagtgg
ccgctgacgacccccgagaagttccagcggatgggtatcgaggctccgaaaggcgtgctc
ctctacgggccgcccggcacgggtaagaccctgatagcgaaggccgtcgccaacgagacg
aacgcgaatttcatctcggtgcgtggcccgcagctgctgtcgaagtgggtcggtgagtcg
gagaaggcgattcggcagacgttccgcaaggcgcggcaggtctccccgaccatcatcttc
ttcgacgagctcgacgcgctcgccccggcccgcggcaacgacatgggcaacaacgtctcc
gagcgcgtcgtcaaccagctcctgacggagttagacggcctcgaagacgcgggcaacgtc
atggtcatcgcggcgaccaaccgcccggacatgatcgaccccgcgctcatccgctcgggc
cggttcgaccgcctcgtgctcatcggccagcccgaagaggagggccgcgagcagattctc
gacatccacacgcagcagagtccgctcgcgccggacgtgagcctccgcgaaatcgcggag
ataaccgacggctacgtcggctccgacctcgaatccatctgccgcgaggcggccatcgag
gcgctccgcgaggactccgacgccgaggaaatcgagatgcgccacttccgcaaggcgatg
gagtcggtccggccgaccatcaccgaggaactgatgcgctactacgaggacatccaagac
cagttcaaaggcggctcccgcgaggggctgtcgcccgacacccgcgacggcggccgcatc
ggcttccagtaa
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