Haloferax volcanii SVX82: SVXHx_2872
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Entry
SVXHx_2872 CDS
T08885
Symbol
enda
Name
(GenBank) tRNA splicing endonuclease
KO
K01170
tRNA-intron endonuclease, archaea type [EC:
4.6.1.16
]
Organism
hln
Haloferax volcanii SVX82
Brite
KEGG Orthology (KO) [BR:
hln00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hln03016
]
SVXHx_2872 (enda)
Enzymes [BR:
hln01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
SVXHx_2872 (enda)
Transfer RNA biogenesis [BR:
hln03016
]
Prokaryotic type
tRNA spricing factors
tRNA splicing endonucleases
SVXHx_2872 (enda)
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GFIT
Motif
Pfam:
tRNA_int_endo
tRNA_int_endo_N
Motif
Other DBs
NCBI-ProteinID:
WEL27146
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Position
complement(2717680..2718699)
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AA seq
339 aa
AA seq
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MQGRLEDGVVHLPGDARQRFHDSRGYGRPTGGDDLEVAPVEAAHLLSRDDIDGVDGMGLR
ELLARTGTTLDFVVYKDLRDRGFYLSPAREGWPGVADAAGADFLVYPRGKGPWDGEVEHR
VRVVGERESIPVSSLGEVVLAIVDEDGDLTYFDTESDSPEGTAAEDLPADLDAELLSDRA
LVWDGVDRLYQRGFFGQRLYGRNADSGPLQLSLLEAAYLARADALAIDEADVVSRGRDVE
GDRFDRRLAVYAALREAKTVPKSGFKFGSDFRVYTEFESVDDLSHSEFLVRVVAPDHTFV
PRDLSLDVRLAGGVRKRMVFALTDDNGEIDWLSVSRLTP
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
atgcaaggacgcctcgaagacggcgtcgtccatctcccgggcgacgctcgacagcggttc
cacgactcccgcggctacgggagacccaccggcggcgacgacctcgaggtcgcgcccgtc
gaggccgcccacctgctctcgcgggacgacatcgacggcgtggacgggatgggcctgcgc
gaactcctcgcgcgcaccgggaccaccctcgatttcgtcgtctacaaagacctccgcgac
cgcgggttctacctctcgcccgcccgggaggggtggccgggcgtcgcggacgccgcgggc
gctgacttcctcgtctacccccgcgggaaggggccgtgggacggcgaggtcgaacaccgc
gtccgcgtcgtcggcgagcgcgagagcatccccgtctcgtcgctcggtgaggtggtgctc
gccatcgtcgacgaggacggcgacctgacctacttcgacaccgagagcgactctcccgag
gggacggccgcggaggacctcccggccgacctcgacgcggaactcctctcggaccgcgcg
ctcgtctgggacggcgtcgaccgcctctaccagcgcggcttcttcggccagcgcctgtac
ggcagaaacgccgacagcggcccgctccaactgtcgctgctggaagccgcctacctcgcc
cgcgccgacgcgctcgccatcgacgaggccgacgtggtctcccgcggccgcgacgtggag
ggcgaccggttcgaccgtcgactcgcggtgtacgccgcgctcagggaggccaagacggtc
cccaagagcggcttcaagttcggctcggacttccgcgtctacaccgagttcgagtcggtc
gacgacctctcgcactccgagttcctcgtgcgcgtggtcgcgcccgaccacacgttcgtc
ccgcgggacctctcgctcgacgtgcgcctcgccggcggtgtccgcaagcgaatggttttt
gcgctgaccgacgacaacggagagatagactggctttcggtcagtcggctcacgccatga
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