Haloferax volcanii SVX82: SVXHx_5013
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Entry
SVXHx_5013 CDS
T08885
Symbol
spt15
Name
(GenBank) TATA-box binding protein (TBP), component of TFIID and TFIIIB
KO
K03120
transcription initiation factor TFIID TATA-box-binding protein
Organism
hln
Haloferax volcanii SVX82
Pathway
hln03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hln00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
SVXHx_5013 (spt15)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hln03000
]
SVXHx_5013 (spt15)
03021 Transcription machinery [BR:
hln03021
]
SVXHx_5013 (spt15)
Transcription factors [BR:
hln03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
TATA-binding proteins
SVXHx_5013 (spt15)
Transcription machinery [BR:
hln03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
SVXHx_5013 (spt15)
RNA polymerase III system
TFIIIB
SVXHx_5013 (spt15)
RNA polymerase I system
SL1/TIF-1B
SVXHx_5013 (spt15)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TBP
DUF3378
Motif
Other DBs
NCBI-ProteinID:
WEL28029
LinkDB
All DBs
Position
pSVX82-3:11572..12138
Genome browser
AA seq
188 aa
AA seq
DB search
MSHEARLESLEIQNVVASSAVGQELDLESLSNDVAGAEFNPDNFPGLVYRTQDPRAANLI
FRSGKIVCTGASSVDGVNRALDQVFEELGSLGIPTDDREEATVQNIVSSADLGTNLNLNA
LAIGLGLENVEYEPEQFPGLVYRIDEPKVVVLMFGSGKIVITGAKKVDFAREAIQVVSDE
IESLGLLG
NT seq
567 nt
NT seq
+upstream
nt +downstream
nt
atgtcccacgaagcacgccttgagtctctggagattcaaaatgtcgttgcatcgagtgcc
gtcggccaggaattggatttggaatcgctctcgaacgacgtcgccggagcggagttcaac
cctgataacttccctggactcgtgtaccggacccaagaccccagagcagcgaatctgatc
ttccggtctggaaaaatcgtgtgcactggtgcgagtagcgttgacggcgtcaaccgtgca
ttagaccaggtgttcgaagaactcggcagtcttggtattcccaccgatgaccgagaagag
gcaacggtccagaacatcgtctcgagcgcagacctcggaacgaatctcaacctgaatgcg
cttgcgatcggtctaggattggaaaatgtcgagtatgaacccgagcaattccccggtctc
gtctatcggatcgacgagcccaaagtagtggtcttgatgtttgggtcgggaaagattgtc
atcacgggtgcgaagaaggtggactttgcacgggaggcgattcaggtcgtaagcgacgag
attgaatcgctggggttactcggctga
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