Natrinema longum: J0X27_00425
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Entry
J0X27_00425 CDS
T07116
Name
(GenBank) transcription initiation factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
hlo
Natrinema longum
Pathway
hlo03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hlo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
J0X27_00425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hlo03021
]
J0X27_00425
Transcription machinery [BR:
hlo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
J0X27_00425
Prokaryotic type
Archaeal type
TFB
J0X27_00425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
DUF8054_C
Cas12f1-like_TNB
Zn_ribbon_3
Trm112p
HTH_Tnp_ISL3
Zn_ribbon_Nudix
DZR
Zn_ribbon_tTFIIB
DNA_ligase_ZBD
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
QSW85351
UniProt:
A0A8A2U986
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All DBs
Position
complement(89654..90634)
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AA seq
326 aa
AA seq
DB search
MTDSPIRTRTDERDRAESDAAAEPTRERERCPECGGRLVADDEHAETVCTDCGLVVDADE
IDRGPEWRAFDAAEKDEKSRVGAPTTNMMHDQGLSTNIGWQDKDAYGKSLSSRQREKMQR
LRTWNERFRTRNARERNLKQALGEIDRMASALGLPDTVRETASVIYRRALEDDLLPGRSI
EGVATASLYAAARQAGTPRSLDEIAAVSRVEKDEVARTYRYVVRELGLEIQPADPESYVP
RFASDLDLADETEHRARGLLATAKETGIHSGKSPVGLAAAAVYAAALLTDEQVTQNDVSD
VANISEVTIRNRYHELLEADEEGAAA
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atgactgactcacccattcggacgcggactgacgagcgagaccgagccgagagcgacgcg
gccgccgaacccacccgcgagcgagagcggtgcccggagtgtggcggtcgactggtcgcc
gacgacgaacacgccgagacggtctgtacggactgtggcctggtggtcgacgcggacgag
atcgatcggggccccgagtggcgagcgttcgacgccgccgaaaaggacgagaaatcccga
gtgggcgcgccgacgaccaacatgatgcacgatcaggggctctcgacgaacatcggctgg
caggacaaagacgcctacgggaagtccctgagttcccgccagcgcgagaagatgcagcgc
ctgcgcacctggaacgaacggttccggacccgcaacgccagggaacggaacctcaagcag
gcgctcggcgagatcgatcggatggcctccgcactcgggctccccgacaccgttcgggaa
acggcgagcgtcatctaccggcgcgcgctcgaggacgacctcctgccgggccgttcgatc
gaaggcgtcgcgacggcctcgctgtacgccgccgcccgtcaggccggtacacccaggagc
ctggacgaaatcgcggccgtttcacgcgtcgagaaagacgaggtcgcccgcacctatcgc
tacgtcgtccgcgaactcggcctcgagatccagccggccgatcccgagagctacgtcccc
cggttcgccagcgatctcgacctcgccgacgagaccgaacaccgcgctcgcgggttactg
gcgacggccaaagagacggggatccacagcggcaagtcgccggtcggcctcgccgccgcc
gcggtgtacgccgccgcgctcctgaccgacgagcaggtcacgcaaaacgacgtcagcgac
gtcgccaacatctccgaagtgacgatccgcaaccgctaccacgagttgctcgaggccgac
gaggagggagcggcggcctga
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