KEGG   Natrinema longum: J0X27_01615
Entry
J0X27_01615       CDS       T07116                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
hlo  Natrinema longum
Pathway
hlo03030  DNA replication
hlo03410  Base excision repair
hlo03420  Nucleotide excision repair
hlo03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:hlo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    J0X27_01615
   03410 Base excision repair
    J0X27_01615
   03420 Nucleotide excision repair
    J0X27_01615
   03430 Mismatch repair
    J0X27_01615
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hlo03032]
    J0X27_01615
   03400 DNA repair and recombination proteins [BR:hlo03400]
    J0X27_01615
Enzymes [BR:hlo01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     J0X27_01615
    6.5.1.6  DNA ligase (ATP or NAD+)
     J0X27_01615
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     J0X27_01615
DNA replication proteins [BR:hlo03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    J0X27_01615
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     J0X27_01615
DNA repair and recombination proteins [BR:hlo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     J0X27_01615
   NER (nucleotide excision repair)
    Other NER factors
     J0X27_01615
   MMR (mismatch excision repair)
    Other MMR factors
     J0X27_01615
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Other DBs
NCBI-ProteinID: QSW85568
UniProt: A0A8A2UCF2
LinkDB
Position
complement(330836..332569)
AA seq 577 aa
MEFATFADRAGTIDAEPADLEIVAHVRELLAEAGDDLEIVARFAQGRVFPAWDSTTLDIG
PNACYEAIARAAGTNVSAGDVEDRLAAVGEIGDVAASYDFGGQRGLSAFTGGGGAGSESE
GTGGDLTVREVSDTLEEVAAAEGSGSQDRKVDLLFGLFNRCSSEEARYLARIVLSEMRIG
VGEGAVRDAIAEAFDVPAERVERALQVSNDYGQVARIAREEGLEGLDAMDLEVGRPVQAM
LAQAGTVTDALEEWEEAGVEWKYDGARVQLHHDPAGSGGATAETRVFSRNMEEVTDALPE
VVEFAADHLEEPAILDGEVVAIDADGSPLPFQEVLKRFRRKHDVAKAREAVSVRPVFFDC
LHAGGDDLLAEPLTTRHDRLRSVLVDSTVDSGAVDDEDIEGLSLLWRTDDPEEIESIDAD
ALEAGHEGIMLKDPDSTYSPGRRGKHWRKRKPDVETLDCVVTGAEWGEGRRATFLGTFEL
SVRAGDDLETVGKVATGITDEKLAELTELLEPHVAAEEGQDVDLEPAVVFEVGYEEIQSS
PTYSSGYALRFPRFQGVRPDKDPADADSLERLERLRG
NT seq 1734 nt   +upstreamnt  +downstreamnt
atggagttcgccacgttcgccgaccgcgccgggacgatcgacgccgaacccgccgacctc
gagatcgtcgctcacgttcgggagttgctcgccgaggccggcgacgacctcgagatcgtc
gcgcgcttcgcccagggccgggtgtttccggcctgggattcgacgaccctggatatcggc
cccaacgcgtgttacgaggcgatcgcccgcgccgcggggacgaacgtgagcgccggcgac
gtcgaggaccgcctcgcagctgtcggcgagatcggcgacgtggcggcgagttacgacttc
ggtggccagcggggactgagtgcgttcaccggcggtggcggcgctggaagcgagagcgag
ggcaccgggggcgacctcaccgttcgcgaggtgtccgatacgctcgaggaggtcgccgcc
gccgagggctcggggagccaggatcgcaaggtcgacctgctctttggactgttcaatcgc
tgctcgagcgaggaggcgcgttacctcgcccggatcgtcctctcggagatgcgcatcggg
gtcggcgagggggcagtgcgggacgcgatcgccgaggccttcgacgtgcccgcagagcgg
gtcgagcgcgccctgcaggtgtcgaacgactacgggcaggtcgcacggatcgcccgcgag
gaggggctcgagggactcgacgcgatggacctcgaagtcggccggcccgttcaggcgatg
ctcgcccaggccgggacggtgaccgacgcgctcgaggagtgggaggaggccggcgtggag
tggaaatacgacggggctcgcgtgcagttacaccacgatcccgccggctccggaggggcg
acggcggagacccgtgtcttctcgcggaacatggaggaggtcaccgacgcgctgcccgaa
gtcgtcgagttcgccgcggaccacctcgaggaacccgcgatcctcgacggcgaggtcgtc
gcgatcgacgccgacggctcgccgttaccgtttcaagaggtgctcaagcgcttccgccgg
aaacacgacgtcgcgaaggcccgcgaggccgtctcggtccggccggtcttcttcgactgt
ctccacgccggcggcgacgacctgctcgcggagccgttgacgacgcgccacgaccggctt
cgatcggtcctggtggactcgaccgtcgattccggagccgtcgacgacgaggatatcgag
ggactctccctgctgtggcgtaccgacgaccccgaggagatcgagtcgatcgacgccgac
gccctcgaggcgggccacgaggggatcatgctcaaagaccccgactcgacgtactcgccg
ggacgacgcgggaagcactggcggaagcgaaaaccggacgtcgagacgctcgattgcgtc
gttaccggtgcggagtggggcgagggccgtcgggcgacgttcctcgggaccttcgaactg
tccgtgcgtgcgggcgacgacttagagaccgtcggtaaggtcgcgaccggaatcaccgac
gagaagttggcggaactgacggaactgctcgagccccacgtcgctgccgaggagggacaa
gacgtcgacctcgagcccgcggtcgtcttcgaagtcggctacgaggagatccagtcctcg
ccgacgtactcgtcgggatacgcgctccggttccctcggtttcagggcgtccggcccgac
aaggaccccgcggacgccgactcgctcgagcgactcgagcgccttcgggggtag

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