Natrinema longum: J0X27_02920
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Entry
J0X27_02920 CDS
T07116
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
hlo
Natrinema longum
Pathway
hlo04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
hlo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
J0X27_02920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hlo03019
]
J0X27_02920
03009 Ribosome biogenesis [BR:
hlo03009
]
J0X27_02920
04131 Membrane trafficking [BR:
hlo04131
]
J0X27_02920
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hlo04147
]
J0X27_02920
Messenger RNA biogenesis [BR:
hlo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
J0X27_02920
Ribosome biogenesis [BR:
hlo03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
J0X27_02920
Membrane trafficking [BR:
hlo04131
]
SNARE
SNARE associated proteins
Others
J0X27_02920
Autophagy
Aggrephagy
Other aggrephagy associated proteins
J0X27_02920
Exosome [BR:
hlo04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
J0X27_02920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
CDC48_2
RuvB_N
AAA_16
AAA_2
AAA_5
TIP49
AAA_14
AAA_22
AAA_33
NPHP3_N
RNA_helicase
nSTAND3
AAA_28
AAA_7
Mg_chelatase
AAA_25
IstB_IS21
ABC_tran
DUF815
AAA_3
NB-ARC
AAA_lid_PRS2_C
TsaE
Sigma54_activat
AAA_11
AAA_24
AAA_18
AAA_17
AAA_30
Parvo_NS1
ATPase
Zeta_toxin
PhoH
SLFN-g3_helicase
bpMoxR
Bac_DnaA
ATP-synt_ab
Zot
Motif
Other DBs
NCBI-ProteinID:
QSW85804
UniProt:
A0A8A2UB19
LinkDB
All DBs
Position
complement(605410..607677)
Genome browser
AA seq
755 aa
AA seq
DB search
MKLTVKPLKQKDAGRGLAAIDRVSMTELDLENGDYVVISGNGDGQAVARVWPGYPEDEGR
GIVRIDGRLRQEADVGIDDNVSIEPADVKPAKSVTVALPQNLRIRGDIGPLVRDKLSGQA
VTEGQTVPFSLSFGPMASSGQSVPLKIASTSPSGTVVITDSTSIEVSETPAEQVSSGGPA
SADGVPNVTYEDIGGLDNELDQVREMIELPMRHPELFQQLGIEPPKGVLLHGPPGTGKTL
MAKAVANEIDAHFETISGPEIMSKYYGESEEKLREVFEEAEENAPAIVFIDELDSIAAKR
EDAGGDVERRVVAQLLSLMDGLEERGRVTVIAATNRVDDIDPALRRGGRFDREIEIGVPD
KEGRKEILQVHTRGMPLDEGIDLEQYAENTHGFVGADLESLARESAMNALRRIRPDLDLE
SQEIDADVLESLQVTEGDFKEALKGIQPSAMREVFVEVPDVTWNDVGGLEDTKERLRETI
QWPLDYPDVFEQLDMQAAKGVLMYGPPGTGKTLLAKAVANEAQSNFISIKGPELLNKYVG
ESEKGVREVFEKARSNAPTVIFFDEIDSIAGERGQRQGDSGVGERVVSQLLTELDGLEEL
EDVVVIATTNRPDLIDSALLRPGRLDRHVHVPVPDEDGRKKIFDVHTRNKPLAESVDLEW
LAGKTEGYVGADIEALCREASMAASREFINSVDPEDMNDTLGNVRIGREHFEHALEEVKP
SVTPETREEYEELEEKLQQAEPGEGQDEQLGRTFQ
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
atgaaacttactgtaaaaccactgaagcaaaaggacgcgggtcgcggactggccgcgatc
gaccgtgtctcgatgaccgaactcgacctcgagaacggagattacgtcgttatctcgggc
aacggcgacggacaggccgtcgctcgcgtctggcccggctaccccgaagacgagggacgc
ggtatcgtccgcatcgacggccgcctgcgccaggaggccgacgtcgggatcgacgacaac
gtcagtatcgaaccggcggacgtcaaacccgccaaatcggtcaccgtcgcactcccacag
aacctgcggatccgcggcgatatcggtccactcgtccgcgacaagctgagcggacaggcc
gtcactgaggggcagacggtaccgttctcgctctcctttgggccgatggccagttccggt
cagtcggttccgctgaagatcgcgagcacctcgccgtcgggaaccgtcgtcatcacggac
tcgacgagcatcgaagtctccgagacgcccgccgagcaggtgagctccggcggccccgcc
tctgccgacggcgtcccgaacgtcacctacgaggacatcggcggcctggacaacgaactc
gaccaggtccgcgagatgatcgaactgccgatgcgccaccccgagctgttccagcagttg
ggcatcgagccgcccaaaggtgtcctcctgcacggcccaccggggaccgggaagaccctg
atggccaaggccgtcgccaacgagatcgacgcccacttcgagacgatctccggcccggag
atcatgtcgaagtattacggcgagagcgaggagaagctccgcgaggtcttcgaagaagcc
gaggagaacgcccccgcgatcgtcttcatcgacgaactcgactcgatcgcggcgaaacgc
gaggacgccggcggcgacgtcgaacgacgcgtcgtggcccaactgctcagcctgatggac
ggcctcgaggaacggggccgggtgacggtcatcgcggcgaccaaccgcgtcgacgacatc
gatcccgcgctccggcgtggcggccgattcgaccgcgagatcgagatcggcgtccccgac
aaggagggccgcaaggagatcctgcaggtccacacccgggggatgcccctcgacgaaggg
atcgacctcgagcaatacgccgaaaatacccacggcttcgtgggagccgacctcgagtcg
ctggcccgcgagagcgcgatgaacgcgctccggcggatccgccccgacctcgacctcgag
tcccaggagatcgacgccgacgtcctcgagtccctgcaggtcactgaaggtgacttcaag
gaggcgctcaagggcattcaaccctccgcgatgcgggaggtcttcgtcgaagtccccgac
gtcacctggaacgacgtcggcggcctcgaggacaccaaagagcgactccgcgagacgatc
cagtggccactcgactaccccgacgtgttcgagcaactggacatgcaggccgccaaaggc
gtcctcatgtacggtccgccgggcaccgggaagaccctgctcgcgaaggccgtcgccaac
gaggcccagtcgaacttcatctcgatcaagggacccgagttgctgaacaagtacgtcggc
gagtccgagaagggcgtccgcgaggtcttcgagaaggcccggtcgaacgcgccgaccgtg
atcttcttcgacgagatcgactcgatcgcgggcgaacgcggccaacgccagggcgactcc
ggcgtcggcgaacgcgtcgtctcccagctcctgaccgagctcgatgggctcgaggagctc
gaggacgtcgtcgtcatcgcgacgaccaaccggccggacctaatcgacagcgccctgctg
cgccccggtcgcctcgaccgccacgtccacgtgccggttcccgacgaggacggtcgcaag
aagatcttcgacgtccacacccgcaacaagccgctggccgagtccgtcgacctcgagtgg
ctcgcgggcaagacggagggctacgtcggtgccgacatcgaggcgctctgccgcgaggcc
tcgatggccgccagccgcgaattcatcaactcggtcgaccccgaggacatgaacgacacc
ctcggaaacgtccgcatcggccgcgagcacttcgagcacgcgctcgaggaagtcaagccg
agcgtcacccccgaaacccgcgaggagtacgaggaactcgaagaaaagctccagcaggcc
gaacccggagagggacaggacgaacagctcggacggaccttccagtaa
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