Natrinema longum: J0X27_05335
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Entry
J0X27_05335 CDS
T07116
Name
(GenBank) DEAD/DEAH box helicase
Organism
hlo
Natrinema longum
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DNA_ligase_ZBD
ResIII
DRC7_C
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QSW86243
UniProt:
A0A8A2UC81
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All DBs
Position
1048125..1053653
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AA seq
1842 aa
AA seq
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MKDPVASAEQMQAAYHDYFIGRGGRAARSVANRLADGEDDITGMRGPYLQALDIPNWSGR
SWDAFARSARLEPHIRRAFSKIGFERLYDFQERSIEAILEGNDTVITAATGRGKTEAWLI
PILNRILEDKRHSDGGDDTSVKATLIYPTKALAQDQLKRLLQYLYLINNHLRSEQQITVG
IYDGDTPRNVGESGSEGYLNATFRHFECPGYNDELDKCQDCGGGVRIRNTGARFKLIPEK
AHCEDDEPHDVPLDFLRLTKNDILENGVDILLTNPDTINYRLINTNAEDEHERFVYEPEF
LVFDEVHTYDGLFGSYTSTLMKRIQSLREERGLDDLQLVASSATVENDVELFQKVSGAVD
VKQVSESPRDLDGEVPDDVPEELMSHSLSVDRILRATAAPDDVVPGLDAFDYTLEDASSY
DRDRRETLVSDALFDHLTEVEDDLGAQVVRYVHQLLYDEPLTRSQLHDELATTLNLDTDE
ASKLVSNVRTLGEFSGMLENRSHVFSWPIDGFYTCPSCDATYRSPQDDCNECGFDFVTRS
TYCRHCSDEHLVGWYCPGCDQLEPYTPTEHGTIDQDEEHVCRRCEEARDDVVQMVRTTFQ
PFLECLDCGLRTERTTTRDCPECGSKTVRTDDKTFTCVNPKCESAHEIERVCDSCDGSDF
GLATVANRFDCPECGATYEHPEQAPDQCVDCGSSLTSTRFLPWVCGSDDCSRVLFDDSPN
QCDCGTSSFVKRGLFEIHDDQHCRSCETAFLGDEGCNCDDPDIHPRTGHHQAYKTIDTSG
WIHTMSSQPSAVPCPHPYARYEIDRRFDELMRGPSNLAVTTSQYMLRRVADEEGQQAAKL
LSFADSHRDMKELSRDFSEPEVETLLDQLLIESASSRNDGNDWTPFNQVLEDAANIVDEV
NDALEPPRVARSVEFDLKSRLKDQPRKRWDDDDALRDRLTRRALEHTYSQRLGERDGSLT
EEGLLDVRFAPGLDELDGDERAIVRELADEGNDYRVANFDHPSPDRPAEAVVDELVDRNI
LSYGHSDDYVSFDPSALAVTVAGDGDGIRFDPDTERYYTMLQHQFGLDTQSTVQSGTSLA
ERASTSHPRFTQRAHRAEYSETRILISEEYLGATNKRKRRELEYLFREENYPHHLSSGPT
MELGVDIGDLDALLLYGTPPNMNAYLQRVGRAGRSSHSSMVHSVSQRNPIDYYYYDHPDE
LIDTDPTPVPLNEHNEEVLRVSLSWGIFDYVAANFTIPWDVSRHGSARSIDGGDTYHRRS
MLNESERDDASKLTHVMSLGADTLSLGSDDSKLDVLGEVVDDYERDIADYLESLLDYRYC
EECERRYATDDDRETCTNSDCDGEILHAQSEFGHLVDDVLANFDERYITGYREYKRGLES
ELSDLKRRNSRLRRDQQRAGSDERARIMRERRGLKDRIEVLEDYLSDLGGASYFDFLRES
RESKYDFSMRSVATTAGLSLVDEGYNRRNVGDQGSGRAMQMALSELHPGAAYLDGGETYT
VSRVRLDDKASSDLRDTVSEAVDGDHLAEELVCPACHTSHDLDADGCDCDNDVPLKRRRL
AVLDSVDAYHDNLKLTAEGDEARYLHDEPNKPIQNTYAERETSILEFDSERTFELQDADG
DPLGTIEYGDYSVLLHTKSYKTKYKSGEVDPRPTAFEVCGEENCPGVIYRDDDDERRCSA
DSDHFPNGRGADSEFIRLGYQYDTQGVRVDLNDRDLSHTLAHGLRVALQYLGGVNIRDLA
EYVGEEHVDVFESQEGGSDVARLLFERTDGEFRAFHRAVGLMRDQFDCDCENGCPSCLYQ
YGCDVRNDQRSFDRERLRDILANGSVIIQPITNHEIDEQLTD
NT seq
5529 nt
NT seq
+upstream
nt +downstream
nt
atgaaggatcccgtcgccagcgcggaacaaatgcaggctgcataccacgactactttatc
ggtcgtgggggacgagctgcgcgtagtgtcgctaatcgcctggcggacggcgaggacgac
atcacggggatgcgcggcccctaccttcaggcactcgacatcccgaactggagcggccgt
tcgtgggacgcgttcgccaggtcggcacgtctcgagccgcatatccgccgggctttctcg
aagatcggcttcgagcggctctacgacttccaggagcgtagtatcgaggccattctcgag
ggaaatgataccgtcattactgccgcgacgggacgaggaaaaactgaagcgtggctcatt
cctatcctcaaccgcatcctcgaagacaaacggcacagtgacgggggagacgacacgagc
gtcaaggctacgctcatctatccaacaaaggcacttgcgcaggaccagttgaaacgtctc
ctccagtacctctacctcatcaacaaccacctacggtcggaacaacagatcaccgtcggt
atttacgacggtgataccccgcggaatgtcggcgaatcaggctccgaagggtacctcaat
gcgaccttccgtcacttcgagtgccctgggtacaatgacgaactcgacaaatgccaagac
tgcggtggtggtgttcggatccgaaacaccggcgctcggttcaaactcattccagagaaa
gcgcactgtgaagacgatgaaccgcacgacgttccgctcgatttcctgcggctaacgaag
aacgacatcctcgagaacggcgttgacatcctgctcaccaacccggacacgatcaactac
cgactcatcaacactaacgccgaagacgaacacgagcggttcgtctacgaacccgagttc
ctcgtcttcgacgaggtccacacctacgacggcctgttcgggagctacacgtcgacgctg
atgaagcgaatccagtcgctccgcgaggaacgcggccttgacgacttacaactcgtcgcg
agcagtgcgaccgtcgagaacgacgtcgagttgttccagaaggttagcggtgccgtcgat
gtcaaacaggtgagtgagtcaccacgcgacctcgatggggaggttccggacgatgttccg
gaagagctaatgtcgcacagtctgtccgtcgaccgcattctgcgtgcgacggccgcgccg
gacgacgttgttccgggcctcgatgcgttcgactacacgctggaggatgcatcgagttac
gaccgtgaccgccgggagacgctagtgagtgacgctctcttcgaccatctcaccgaggtc
gaggatgacctcggcgcacaggtcgttcgctacgtccaccagttgctgtacgacgagccg
ctcacacggtcccaactacacgacgagttagcgacgacgctgaatctcgacaccgatgaa
gcatcgaaactggtgtcgaacgtccggaccctcggtgagttttccggtatgctggagaac
cgaagtcacgtgttctcttggccgatcgacggcttctatacgtgtccatcgtgtgacgcg
acgtaccgctccccacaggacgactgtaacgagtgtggattcgacttcgtcacgcgctct
acctactgccgacactgtagcgacgaacaccttgtcggatggtactgtccaggctgcgac
caactagagccgtacacgccgaccgaacacgggacgatcgaccaagacgaggaacacgtc
tgccgccgatgtgaggaagcgcgcgacgatgtcgtccagatggttcgtacgacgttccag
ccgttcctcgagtgcctcgactgtggactccgaaccgagcgaacgacgacccgtgactgt
cccgagtgcggttccaagaccgtcaggaccgacgataagacgttcacctgcgttaatccg
aagtgtgagtcggctcacgagatcgagcgagtctgcgacagctgtgacgggtccgacttc
ggactagctactgttgcgaatcgattcgattgcccggaatgtggcgcgacttacgaacac
cccgagcaggcccctgaccagtgtgtcgactgtggttcctcactcacctcgacgaggttc
cttccctgggtctgtgggagcgacgattgtagccgggtcctcttcgatgattcccccaat
caatgcgactgtggcacatcgtcgttcgtaaagcgcggactcttcgagattcacgacgac
caacactgccgttcgtgtgagacggcattcctcggcgacgagggttgcaactgtgacgat
ccggacattcatccgcggaccggtcaccatcaggcctacaagacgatcgacaccagtggg
tggattcacacgatgagttcgcagccgtcggctgtcccgtgcccgcatccgtatgcccgg
tacgagattgaccgccggttcgacgaactgatgcgaggtccgagcaacctcgcggtgacc
acctcgcagtacatgttgcgccgcgtggccgacgaggaaggccaacaggcggcgaagctc
ctgtcgttcgctgactctcaccgtgacatgaaggagctcagtcgtgacttctcggaacca
gaggtcgagacccttctcgatcaactgttaatcgaaagtgcgtcgtcccgtaatgacggg
aacgactggacaccgtttaatcaagtcctcgaggatgcggcgaacatcgtcgacgaggta
aacgatgcactggaaccgccgcgagtcgcgaggagtgtcgagtttgacctgaagtcacga
ttgaaagatcagccccgaaagcgctgggacgacgatgacgcgcttcgggatcgactcacc
cgacgcgcactcgaacacacctacagccagcgtttgggcgagcgggacggctccctcacc
gaagaaggactgctcgatgtccgctttgccccaggtctcgacgaactcgatggtgatgag
cgcgctatcgtccgcgaactcgccgacgaaggcaatgactatcgtgtcgcaaacttcgac
catccgagtcccgacaggcccgccgaagcagtcgtcgacgaactggtcgaccgcaatatc
ctctcctacgggcactctgatgactacgtctcgttcgatccgtcggcgctcgctgttacg
gttgcgggcgacggtgatggtattcggttcgaccctgatactgagcggtactacacgatg
ctccagcaccagtttggtctagatacgcagtccactgttcagtccggaacgtcgctcgcc
gaacgtgcctcgacctcccatccccggttcacacagcgtgcccaccgtgccgaatactca
gagacgcggattctcatctctgaggagtatctcggggcgacgaataagcgcaaacgtcgg
gagttagagtacctcttccgcgaggagaactacccccaccacctctcttcgggaccgacg
atggaactcggagtcgacatcggcgacctcgacgcactcctgctgtatgggacgccgccg
aacatgaacgcgtacctccagcgggtcgggcgtgcggggcgcagctcccattcttcgatg
gttcactcggtcagtcagcgcaacccgatcgactactactactacgaccacccggacgaa
ctcatcgacaccgatccgactccagtaccgctcaacgaacacaacgaggaggtcctacgc
gtttcgctgtcgtgggggatcttcgactacgtggcggctaacttcactattccgtgggat
gtcagtcgacacggtagcgcgcggtcgatcgatggtggagatacctatcaccgtcggagc
atgcttaacgagagcgaacgtgacgacgccagtaaactgacccacgtcatgtccctcggt
gccgacacgctgtcgctcggcagcgacgactcaaaactcgacgtactcggcgaagtcgtc
gacgactacgaacgagacatcgccgactaccttgaatctctcctcgactaccgctactgc
gaagaatgtgagcggcggtacgctactgacgacgaccgcgaaacgtgtaccaacagtgac
tgtgatggagaaatcctgcacgctcagagcgagttcggccaccttgtcgacgacgttctc
gcgaactttgacgagcgctacatcactggataccgtgaatacaaacggggactggaaagt
gagttgtccgacctgaaacgacgtaactctcgattgcgtcgtgaccagcagcgggccggg
tcagacgaacgggcacgcatcatgcgcgaacgccggggcctcaaggaccgcatcgaggtt
ctcgaggactacctctctgatctgggtggtgcgagctacttcgacttcctcagagagtcc
cgtgaaagcaaatacgacttctcgatgcggagcgtcgccacgacggccggtctgtccctg
gtcgacgaagggtacaaccgccggaacgtcggcgatcaggggagcggccgcgcgatgcag
atggcgctctcagaactccaccccggtgccgcctaccttgacggcggggagacgtacacc
gtctcgcgcgtccgactcgacgacaaggctagctcggacctccgtgataccgtgagcgaa
gccgtcgacggagatcacctggccgaggaactcgtctgtccggcgtgccacacctcgcac
gacctcgacgctgacgggtgtgattgcgataacgatgtgccgctcaagcgacgccgactg
gcggtactcgattcggtcgatgcctaccacgacaacctcaaactgaccgcagagggtgac
gaagcgcgctacctccacgacgaaccgaacaaaccgatccagaacacgtacgccgagcgg
gagacgtcgatactcgagttcgactctgaacggacgttcgaactccaggatgccgatggc
gatcctctcgggacgatcgagtacggcgattactcggtcctgctgcatacgaagagctac
aagacgaagtacaagtccggtgaggtcgatccgaggccgacagccttcgaggtatgcggt
gaagagaactgtccaggcgtcatctatcgtgacgatgacgacgagcgtcggtgcagcgcc
gactccgaccacttccctaacggccgcggggctgactccgagttcatccgccttggatac
cagtacgatactcagggtgtccgagttgacctcaatgaccgcgacctgtcgcacacgttg
gcacatggcctccgagtcgcgctgcaatacctcggcggcgtcaacattcgtgacctcgcc
gaatatgtcggcgaggagcatgtagatgtcttcgagtctcaggaaggcgggtccgatgtc
gcgcgtctcctcttcgagcggacggacggagagttccgggcgttccaccgtgcagtcggg
cttatgcgcgatcagttcgactgtgactgcgagaacgggtgtccgtcctgtctctaccaa
tacggctgtgacgtcaggaacgaccagcggtcgttcgaccgagaacgtcttcgagacatc
ctcgccaacggtagcgtgatcattcaaccgatcacgaaccacgaaatcgacgaacagctc
accgactga
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