Natrinema longum: J0X27_14550
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Entry
J0X27_14550 CDS
T07116
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hlo
Natrinema longum
Brite
KEGG Orthology (KO) [BR:
hlo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hlo03016
]
J0X27_14550
Enzymes [BR:
hlo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
J0X27_14550
Transfer RNA biogenesis [BR:
hlo03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
J0X27_14550
Prokaryotic type
tRNA splicing ligases
J0X27_14550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Intein_splicing
Hint
Motif
Other DBs
NCBI-ProteinID:
QSW84657
UniProt:
A0A8A2U7P4
LinkDB
All DBs
Position
2955489..2958428
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AA seq
979 aa
AA seq
DB search
MTTFDANGITLERVREYVWEIPQEGDMRVPARVLASEALLEEIKDDKTLEQITNTTHLPG
ITNHAICMPDGHQGYGFPVGGVGALDAENGCISPGAVGYDINCLSGETEVLLEHGRRVPI
EQLENRFEEEKVMVADDELTPSSIRLFTERDGATVYEVETETGDRIEATADHPFRTPDGM
RPLGELTEGDQVAIQPFQGLPDEEPTEFTVLSKDDFADENSQLLRALTERDLLPLKSTDD
AFNRFLKLVGFHTGDGAIGNDGQTWFYGDSEDLEAIQDDIEAIGFTASKIYERDRSHDID
GNAFETTEYSVRATSKAFQKMLLELGAPDGRKIESDFTTPWYFNRLADWQKALYASAYFG
AEMNTPAAQHDKNLYCPKVSQTRTADVADAGREFMTELASFLGDIDIETNEIERFETDSN
GDHETVRIRLGIKNDSENLIRFFSTVGYRYNAEKQRKSIAALQYLKRKEAVIDRRLSISE
RAKAMADGGTAPAEIKAEFDINERFIERSIWSGRSGRPRPPADFPGFEEYCESVSVRDDC
SVRTRIRSIEPLGEQPVYDIGVTHDAHNFVADGFVVSNCGVRMMRTNLTYDDVRGHEEEL
VDSLFANIPSGLGGGGIVEAGVDTIDEILARGVDWALENGHAVEDDLRHCEDEGRREGAE
PDNVSQKAKDRGKNQIGSLGSGNHFLEVQRVTDVFDSGVGEAYGLEEDQIVVLIHCGSRG
LGHQTCNDYLRKIEQQHKGLLDRLPDRELAAAPAGSQLAEDYYGAMNAAINFAWVNRQLI
MHRTRQVFERVFDRSWEAMEMELLYDVAHNIAKKETHTVSAEPHSADGASGVEPRVDGEE
RELYVHRKGATRAFPAGHPEVPDAYRDVGQPVIIPGSMGAGSYVLRGGENSMDLTFGSTA
HGAGRLMSRTQAKNEFWGGDVQQDLEDQQAIYVKAQSGATIAEEAPGVYKDVDEVVRVSD
ELGIGDKVARTFPVCNIKG
NT seq
2940 nt
NT seq
+upstream
nt +downstream
nt
atgacaaccttcgacgccaacggcatcacgctcgagcgggtgcgcgagtacgtctgggag
atcccacaggaaggcgatatgcgcgtccctgcgcgggtactggcgagtgaagcactgctc
gaggaaatcaaagacgacaagacgctcgagcagatcacgaacacgacccacctgccgggg
atcacgaaccacgcgatctgcatgcccgacgggcatcagggctacggcttcccggtcggc
ggggtcggggcgctcgacgccgagaacggctgtatttcgccgggcgcggtcggctacgac
atcaactgtctctcgggggagacggaggttctcctcgagcacggccgccgggttccgatc
gaacagctcgagaatcgcttcgaggaggaaaaggtaatggttgctgatgacgaactcacg
ccatcgtcgatccgtctattcaccgagcgtgacggtgcgacagtatacgaagtcgagacg
gaaacaggcgatcgaatcgaggcgacggcggatcatcccttccgaaccccggatggaatg
cggccgctcggagaactcactgaaggtgatcaggtagctatccagccgtttcagggcttg
ccggacgaggaaccgacggaatttacggtgcttagcaaagacgatttcgccgacgagaat
tcacagctcctgcgcgcgcttacggagcgtgatctccttccgctgaaatcgacggatgac
gccttcaatcgattcctcaaactcgtcggatttcacactggtgacggtgcgatcggaaac
gacggtcagacgtggttctatggggattccgaggatctcgaggcgatccaagacgatatc
gaagcgatcggctttaccgcgtcgaagatttacgaacgcgatcgatctcacgatatcgac
gggaacgcgttcgagacgacggagtacagcgttcgtgcgacgtcgaaggcgttccaaaag
atgctgctggaactcggcgcacctgacggacggaagatcgagtccgacttcacgacaccg
tggtatttcaacaggctagccgactggcaaaaagcgttgtacgcgtccgcctacttcggt
gccgagatgaacacgcccgctgcccagcacgacaagaacctgtactgtccaaaggtgtcg
cagacgcggaccgctgatgtggctgacgccggtcgggaattcatgacggagctggcgtcg
ttcctcggcgacatcgacatcgaaacgaacgaaatcgaacgcttcgaaactgattcgaac
ggcgaccacgagacggttcggatccgtctcgggatcaagaacgactccgaaaacctgatc
cggttcttctcgaccgtcggctaccggtacaacgccgaaaagcagcgcaaatcgatcgcg
gcactgcagtacctcaagcgaaaggaagcggtaatcgaccgccgactgtcgatctccgaa
cgagcgaaagcgatggccgacggcggaacggctccagccgagatcaaagccgagttcgat
atcaacgagcgattcatcgaacgcagtatctggagtggacggtcgggccggccgcggcca
cccgccgatttccccgggttcgaggagtactgtgagtcagtctccgtgcgtgatgactgc
agcgttcgaacccggatcagatcgatcgaacctctcggcgagcagccagtgtacgatatc
ggtgtcacacacgacgctcacaacttcgtcgccgacggattcgtggtttcgaactgtggc
gtccggatgatgcggaccaacctgacctacgacgacgtgcggggccacgaggaggaactc
gtcgattcgctcttcgccaacatcccatcgggcctcggcggcggcgggatcgtcgaagcc
ggcgtcgataccatcgacgagatcctcgcgcgcggggtcgactgggccctcgagaacggc
cacgccgtcgaagacgacctgcgccactgcgaggacgaagggaggcgcgagggcgcggag
ccggacaacgtgagccagaaagccaaagaccgcgggaagaaccagatcggctcgctgggg
tcgggcaaccacttcctcgaggtccagcgcgtgaccgacgtcttcgattcgggcgtgggc
gaggcctacgggctcgaggaagaccagatcgtcgtgttgatccactgtggctcccgcgga
ctgggccaccagacctgtaacgactacctgcggaagatcgagcaacaacacaagggactg
ctggaccggctgcccgacagggaactcgcggccgcgcccgcggggtcacaactcgccgag
gactactacggcgcgatgaacgcggcgatcaacttcgcgtgggtcaaccgacagctgatc
atgcaccgcacgcggcaggtcttcgagcgcgtgttcgatcgctcctgggaggccatggag
atggagttactctacgacgtggctcacaacatcgcgaagaaggaaacgcacacggtgagc
gcggagccgcactccgcggacggagcgagcggcgtcgagccgcgagtcgacggcgaggag
cgcgaactctacgtccaccgcaagggtgccacgcgggccttccccgccggccaccccgag
gtgcccgacgcctaccgcgacgtcggtcagccggtgatcatccccggcagtatgggcgcg
ggcagctacgtcctccgcgggggggagaattcgatggacctcaccttcgggtcgaccgca
cacggcgcggggcggctgatgagccgcacccaggcgaaaaacgagttctggggcggcgac
gtccagcaggacctcgaggaccagcaggcgatctacgtcaaggcccagtccggagccacg
atcgccgaggaagcgccgggcgtctacaaggacgtcgacgaggtcgtccgcgtctcggac
gaactcggcatcggcgacaaggtcgcgcggacgttcccggtgtgtaacatcaagggctaa
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