Humulus lupulus (common hop): 133781960
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Entry
133781960 CDS
T11341
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 4-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
hlp Humulus lupulus (common hop)
Pathway
hlp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hlp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133781960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hlp03019
]
133781960
Enzymes [BR:
hlp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
133781960
Messenger RNA biogenesis [BR:
hlp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133781960
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
133781960
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
133781960
NCBI-ProteinID:
XP_062077070
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Position
6:27880559..27901321
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AA seq
532 aa
AA seq
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MSSVSVSASAETTITPKVPKFFSIQHTPPPSPTQHHPHAISTFSLVSYNILAQAYVKNFY
FPHSPSHCLSWKARSQAVLTVLKKLGADFLCLQEVDEYESFYKGNMERNGYSSIYIQRGG
YRRDGCGIFFKHDRAELILQEDIDYNDLVNSIQNENLLINDEQNDKKAPETRDAEVKSGS
TLKGISQDRGGPNDPRVRLKRDCVGIMAAFRLKHSHNPIVIVATTHLYWDPAWADVKLAQ
AKYLVSRLAQFKALVSNIFNCASSLILTGDFNSVPGDKVYQYLSSCNESSSSETVQNDRE
NVPIRLCSVYNITKGEPKFTNCTPKFTNTLDYIFFSPSDSIKPVSLLELPESDSYDVVGG
LPNSSHPSDHLPIGAEFEISTPQEVQYMLQSHDISTPSANIATQMRHSLNLNSGPSGTSS
GRGFFTPSRGFFTPGRGRGRGGRNNIMLVCQLCNRPGHIASHCYHRFDISLQGQYNSNPN
NNFAPNTHTPFGSQFQNTNQQAFFTFFGDSLPNNAWYIGMVHRQRGNQPHNN
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atgagttcagtctcagtctcagcctcagctgaaactaccattactccaaaagtacccaaa
ttcttttccattcaacacactcctcctccttctccaactcaacatcatcctcatgctatt
tcaactttcagtctggtctcctataacattctggcccaggcttatgtgaagaacttttat
tttccacactctccatctcattgtctcagctggaaagctcgctcacaagcagtgttaact
gttctcaagaaacttggggctgactttctctgccttcaggaagtcgatgagtatgagagt
ttttacaaaggaaatatggagagaaatggttattctagtatttatattcagagaggtggt
tataggcgtgatggatgtgggatttttttcaagcatgaccgtgcagagttaattttacag
gaagatatagactacaatgatctagtaaactcaattcaaaatgaaaacttattgatcaat
gatgaacaaaatgacaagaaagctcctgaaactagagatgctgaagtgaaaagtggctct
acactaaaaggtatttctcaggatcgggggggtccaaacgatcctcgagtgaggctaaaa
cgtgactgtgttggtattatggctgcattcagacttaagcattctcataatcctattgtt
atagtggcaaccacacatctttattgggatccagcatgggctgatgtcaagcttgcgcag
gctaaatatcttgtatcccgtttagctcaatttaaagcattggtgtccaacatatttaac
tgtgcatcttccctaattttgactggtgattttaattcagttccaggggataaggtttac
caataccttagttcgtgcaacgaatcctcttcctcagagacagtgcagaacgatcgcgaa
aatgttcctattcgtttatgcagtgtctacaatattacaaagggggagcctaagttcact
aactgcacacccaaatttacaaatacactggattacattttcttttctccttctgatagc
ataaaaccagtgagtttgcttgagcttccagaatcagattcttatgatgttgttggtgga
ctaccaaactcaagccatccaagtgatcatttaccaataggtgctgaatttgaaatctca
actcctcaggaagtacaatacatgctgcaaagccatgatatctccactccaagtgccaac
atcgccactcagatgcgtcattctttgaatctgaactctggtccttcaggcacttcttct
gggcgtggcttcttcactcctagccgtggcttcttcactcctggccgtggccgaggcagg
ggcggaaggaacaacattatgcttgtttgtcaactgtgcaatcgaccaggccatattgca
tcccattgttatcatcgtttcgacatttccttacaaggacaatacaactccaaccctaac
aacaactttgcaccaaatactcataccccatttggttctcaatttcaaaacaccaaccag
caagctttctttaccttttttggtgactctcttcctaacaatgcgtggtacatcggcatg
gtacatcgacagaggggcaaccaaccacataacaactga
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