Humulus lupulus (common hop): 133783301
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Entry
133783301 CDS
T11341
Name
(RefSeq) uncharacterized protein LOC133783301
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
hlp Humulus lupulus (common hop)
Pathway
hlp03015
mRNA surveillance pathway
hlp03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
hlp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133783301
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
133783301
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hlp03019
]
133783301
Messenger RNA biogenesis [BR:
hlp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
133783301
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
Motif
Other DBs
NCBI-GeneID:
133783301
NCBI-ProteinID:
XP_062078864
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All DBs
Position
6:complement(217113318..217117031)
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AA seq
714 aa
AA seq
DB search
MDEDGGEQMDQFHRNEAISAVADEGFLGEEEEDDDYEDLYNDVNVGEGFLQSMRKNEDLG
FGNEVVEEKKIEQQQPLVAQEPAVSIPGVGGGSGEGTGGGVGGGDVGARVVGRVGGEGYN
QNLGFRGGEMDLKGNVGSGSSVGGGSGIRVELGQGPSKMNEFEEQSGNTSVGVHVIGQQQ
QQQPPQQQQPPPQQAPPPHVGVVGNVGNMGGDGMMRQPGIGVNVNGVGGNNVVVGVGAGG
GGGGTILFVGDLHWWTTDSELESELCKYGQVKEVKFFDEKASGKSKGYCQVEFYDPAAAT
ACKEGMNGHLFNGRPCLVAFASPFSVKRMGEAQVNRNQQMTQTNVSQARRGPNDAGGKTG
GNNIATGGNYQGGDNNNNNNNRGYGRGNWGRGNAQNMGNRGPVGPMRNRGGGMSGRGIMG
NGGNGFGQGLGATPPLLHPQSMMGQGFDPAFGAPMGRMGSYGGFPGAPTPPFSGILSSFP
PVGSVGLPGVAPHVNPAFFGRGMPMNGMGMMPTAGVDGPNMGMWADPSMGGWGGGEEHGG
GRAGESSYGEEAASDHQYGEVSHDRGGWPNAMKEKDRGSERDWSGSSDRRYREDRDQAYD
RDAPREKDTSHDDWSERRHRDDRDAGRDRERERDRDRERSRDRERERDRDRHREDRDRYA
DHHRYRDRDTEHDDEWERGRSSRTHNKGRVSQEDDHRSRSRDADYGKRRRLTSE
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagatggaggggaacagatggatcagttccatcgcaacgaagcgatctcagct
gtggctgatgagggtttcttgggagaggaggaggaggacgacgattacgaggacctttac
aacgatgtaaatgtcggcgagggtttcttacagtctatgagaaagaatgaggatttgggt
tttgggaatgaggttgtggaggagaagaagattgagcaacaacagcctttagtggctcaa
gagcctgctgtttcgattccgggtgttggtgggggtagcggagagggcactggcggtggt
gttggtggaggagatgttggagctagggttgttgggagagttggaggagagggttacaat
cagaatcttggatttagagggggtgagatggatttgaagggaaatgttggatcgggatcg
tcggtgggtgggggaagtgggattagggttgaattaggtcaaggaccgagtaagatgaat
gagtttgaggagcaaagtgggaatactagtgttggggttcatgttattggtcaacaacag
caacaacagccgcctcagcagcagcaaccaccaccacaacaagctccaccacctcatgtt
ggtgttgttggaaatgttgggaacatggggggtgatggtatgatgaggcaacctggtata
ggtgttaatgttaatggggttggaggaaataatgttgttgtcggagttggagctggaggc
ggaggtggcgggactatattatttgtgggcgatttgcattggtggaccactgattcagaa
ttggagtctgagctatgtaagtatggacaagtgaaggaggttaaatttttcgatgagaag
gcaagtgggaagtctaaaggttattgtcaggttgagttttacgatccagctgctgctaca
gcctgcaaagaggggatgaatgggcatttgttcaatggtcggccttgtcttgttgcattt
gcatccccattcagtgtcaagagaatgggagaggctcaagtaaacaggaatcaacagatg
acccagactaacgtttctcaggctagaagggggcctaatgatgctggtggtaaaactggt
gggaataacattgctactggcgggaattatcaaggtggagataataataataataataat
aacagaggttacggtagaggtaattggggaagaggtaatgctcagaatatgggaaataga
ggtccagttggtccaatgagaaacaggggtggaggaatgagtggtagaggcataatggga
aatggtggaaatggttttgggcagggtcttggtgccaccccgcccttattgcaccctcag
tcaatgatgggccagggttttgatccagctttcggcgctccaatggggagaatgggcagt
tatggaggttttcccggtgccccaacgcctccattttctgggattttgtcttctttccct
cccgttggaagtgttggtttgcctggagttgccccacacgttaatcctgcattttttgga
aggggaatgcccatgaatggaatgggaatgatgccaaccgcaggtgtcgatgggcctaat
atgggaatgtgggcagatcctagcatgggtggatggggtggtggtgaagagcatggtggg
ggaagagctggggagtctagttatggtgaagaggctgcatctgaccatcaatatggggag
gttagtcatgatagaggaggctggcccaatgccatgaaggagaaagatagaggttccgag
agggactggtctgggtcttctgatagaaggtatcgggaggatagggatcaggcttatgat
agggatgcacctagagaaaaagataccagtcatgatgactggtctgaaagaaggcatcgt
gatgatagagacgctggtcgagaccgggaaagggagcgtgatcgggatagagaacgttct
cgtgaccgtgaacgtgaaagggaccgtgataggcatagggaagatagggaccgatatgct
gaccatcataggtacagagaccgtgacactgaacatgatgatgagtgggaaaggggacgg
tcatcaaggactcacaacaagggacgggtctctcaagaggatgatcatcgatcaagatca
agggatgctgattatgggaagaggcggaggctcacttccgaataa
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