Humulus lupulus (common hop): 133783314
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Entry
133783314 CDS
T11341
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
hlp Humulus lupulus (common hop)
Pathway
hlp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hlp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133783314
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hlp03019
]
133783314
Enzymes [BR:
hlp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
133783314
Messenger RNA biogenesis [BR:
hlp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
133783314
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
PHD_ash2p_like
Motif
Other DBs
NCBI-GeneID:
133783314
NCBI-ProteinID:
XP_062078883
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All DBs
Position
6:complement(217243893..217248686)
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AA seq
713 aa
AA seq
DB search
MNKHRSARALSRVLAHSFSSATATPSVPAFPLKQVIKSNFEPALAELRSHVRAADFVAID
LEMTGVTSAPWRECFEFDRSDVRYLKVKDSAEKFAVVQFGVCPFRWDSSNQSFIAYPFNF
YIFPRQELNIDGSSYEFLFQTSSIDFLAKYQFDFNACIHEGISYLSRRQEVDAQKRFDLE
YEGESSVTSYSSKEVRDVPLVSMVDVLFSERMRNRINEWRDRLLQFQNGEFQCQGSPSDS
KQQFETLFYKMRPAISLNGFTSHQLRLIQLVIRKNFEDLSYVRLKGENCDSQHLIVYTDS
KDDRDLLMKEVNDEHRKHAVGKIQAAIGFRHVIDLLSSEKKLIVGHNCFLDIAHVHNKFV
GPLPFEAEDFVASIHKYFPHIIDTKILLNTHPILQQRMKKSKTSLSSAFTLLCPHIALSV
SSGIASDSYVKVEAQVDDSRCSSWNAGAKHEAGYDAFMTGCIFAQACSYVGIDFKLRLSA
ENLAHNEKLQKHINHLYLSWTNADIIDLRTGNKVTETLESNPKRRFSNISFESIVLIWGF
PSKLKAKDIRCCITKAFGPTSVTSVYHLDETAVFVYFSKTDFVSKFFSLKKNLERSNDDP
ISVLNPLTELLEGGNTYAAAYETYKEICSSPISKLLFADQAEATRSKWKTKMVESELAFE
NSSSKNSTKAASDLKSESFFGQISRDDDDKIINSLYSAEDTQPRTSNMRLTRN
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagcaccgttcggcacgtgcgctgtcacgtgtattggcacactccttcagctcc
gccaccgccacgccgtcggtgccggcgtttcctctgaagcaggtgatcaaatcgaacttc
gagccggcgctagctgagctgcgcagccatgtccgagctgcggatttcgtcgccatcgac
cttgaaatgaccggcgtcactagcgcgccgtggcgtgagtgtttcgagttcgaccgctcc
gacgtccggtatctcaaggtcaaggactccgccgagaagtttgccgtcgttcagttcggc
gtatgccccttccgctgggactcctccaatcagtccttcatcgcatacccgttcaatttc
tacattttcccacggcaagagcttaacattgatggttcctcttatgaatttctcttccag
acttcatcaatcgatttcctggctaagtatcagtttgatttcaatgcttgcatacatgaa
ggaatatcttatttatccagaagacaagaagtagatgcacagaaacgttttgatttggaa
tacgagggtgagtcatctgtgacatcctatagttcaaaagaagttagagacgtgccatta
gttagtatggtagacgttctgttcagtgaacgaatgaggaacagaattaatgaatggcgt
gatcggctattacagtttcaaaatggggaatttcaatgtcaagggagtccaagtgattcc
aaacaacaatttgaaactcttttctataagatgcgtccagcaattagtctgaatggattc
acttctcatcagcttaggttgattcagctggttattagaaagaatttcgaagatctttca
tatgttcgtttaaaaggtgaaaattgtgactctcagcatctaatagtctatacagactca
aaggatgacagagatttgcttatgaaagaagtaaatgatgaacatcggaaacacgcagtt
gggaagatccaagctgcaataggttttcgccatgttattgacctgttatcctcagaaaag
aaattgattgttggtcacaattgtttcttggatattgcacatgtccacaacaaatttgtt
ggtcctcttccgttcgaagctgaagactttgttgcttctattcacaagtacttccctcac
ataattgacaccaaaatactactgaatactcatcctatactccaacaacgaatgaagaag
tccaagacatcattatcctcagctttcaccttgttatgcccacatattgctcttagtgta
agtagtggtatagcatctgattcctatgttaaggtggaggctcaagtggatgattcaagg
tgttccagctggaatgctggagccaagcatgaagctggatatgatgcttttatgacggga
tgcatctttgctcaggcatgcagttatgtaggcattgattttaaactccgtttgtcagcc
gaaaacttagcacacaatgaaaaactccaaaagcacatcaaccatctgtatctcagctgg
accaatgctgacattattgatctaagaactggtaataaggtcaccgagactttggaatcc
aacccgaaaaggcggttctccaacatttcatttgagagcattgtgttgatttgggggttt
ccgtcaaaactcaaggccaaggacataagatgttgcatcacaaaagcatttggtccaacc
tctgtaacttctgtctaccacttggacgaaactgcagttttcgtctacttttctaaaacc
gattttgtctccaagtttttcagcttaaagaaaaatctcgagagaagtaatgatgatcca
atttcggttttgaatcctctcactgaactattggaaggtgggaacacctatgctgctgcg
tatgaaacttacaaggagatttgctcttcccccatctcgaaactcttatttgcagatcaa
gcagaggcaactcgttctaaatggaagaccaaaatggtagagtctgagttagcattcgaa
aactcgagttcaaaaaactcaactaaggctgcttcagatttgaaaagtgagtcatttttt
ggccaaatctcgcgtgatgatgatgataagatcatcaattctttatattcagctgaagac
actcagccaagaactagtaacatgaggttgactcgaaactaa
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