Humulus lupulus (common hop): 133788700
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Entry
133788700 CDS
T11341
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X1
KO
K14409
protein SMG7
Organism
hlp Humulus lupulus (common hop)
Pathway
hlp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hlp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133788700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hlp03019
]
133788700
Messenger RNA biogenesis [BR:
hlp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
133788700
mRNA cycle factors
Common to processing body (P body) and stress granule
133788700
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Flp_Fap
Motif
Other DBs
NCBI-GeneID:
133788700
NCBI-ProteinID:
XP_062082254
LinkDB
All DBs
Position
7:complement(147445670..147452381)
Genome browser
AA seq
966 aa
AA seq
DB search
MMIIQVDKMSAPSSRERAQQLYDKINELENKRRRSAQARIPSDPNAWQQIRENYEAIILE
DHAFSEQHNIEYALWQLHYKRIEELRAHFNAALSSSGSNSSQNVKGPARPDRLTKIRLQF
KTFLSEASGFYHDLIVKIRAKYGLSLGYFSEDSDNQSFTEKDGKKSAEVKKGLISCHRSL
IYLGDLARYKGLYGEGDSKTREFTAASSYYMQAASLLPSSGNPHHQLAILASYSGDELVA
VYRYFRSLAVDSPFSTARENLIVAFEKNRHSYSQLSGDAVARGGKDSPAKLSGKARGKGE
GKHVSKDTNAETKLVKEGVSSSQESYKSFCVRFVRLNGILFTRTSLETFAEVLSLVSGGL
RKFLSSGPEEELIFGADAVESGLIVVRLVAILIFTVHNVNRESEGQTYAEILQRNLLLKN
ACIAVFELMSHIMERCVQLHDPSSSFLLPGILVFAEWLACCPDVAAGNDVDEKHGAVRSK
FWNLFISFLNKLMSSGSVSIDDDEDETCFNNMSKYEEGNTENRLALWEDFELRGYVPLIP
AQTLLDFSRKHSFGSDGQKEKKARVKRTFAAGKALAGIVRVDKKAISFDSRIKKFVIGAD
PEMLDNMAHAFSGIPNKDNPGQENQAADKATNMAIAQTNRQLLIEGDEEDEVIVFKPIVA
EKRSEAVDSNWAATYEGLKPSQNASAGDMAFSGSSISAPPVPQHFQPVQPYVSKWMMGEE
AFLANSLNGLRFTGNGHLVKSEIQENHPPMPSVPVQQSFNVSNGGAFYNHTKAAPDTFVP
SMHDVIASSGAIANSFAVKTSATSTGSRKNPVSRPSRHLGPPPGFSRVLPKQVNESVSGS
DLASESPMLDDYSWLDGYQVPLSTKSSGLNNSINYPSHSNPHSVSIGNGLPGTMNFPFPG
KQVPTMPFQSDKQNGWQDYSMLDSLKLQHEQQLQLQQQQATNGNQHFNPPPEQYQGQSGW
TGRYFV
NT seq
2901 nt
NT seq
+upstream
nt +downstream
nt
atgatgataatacaggtagataaaatgtctgctccttcttcaagggagcgtgctcagcag
ctgtatgataagataaatgagttggagaataagcgtcggaggtcagcccaggctcgaatt
ccatcagacccaaatgcatggcagcagatacgggagaattatgaggcaataattcttgaa
gaccatgctttttctgagcagcacaatattgaatacgccttgtggcagttgcattacaag
agaattgaggagctaagagcacatttcaatgctgctctttcttcttctggttcaaactct
tctcaaaatgtgaagggccccgcgcgacctgatcgattgacaaaaataaggctgcagttt
aagacttttctttcggaagccagtggtttttaccatgatttaattgtgaaaatcagagca
aagtatgggctttccctgggttatttctctgaggattcagataaccaaagctttacggag
aaagatgggaaaaaatctgctgaagtaaagaaaggtttgatatcctgtcatcgtagtttg
atatacttgggtgaccttgcacgttacaaaggattgtatggagaaggtgactcaaagact
cgagagttcaccgcagcttcgagttactatatgcaagctgcttctcttttgccatctagt
gggaatccacatcatcagcttgctattttggcttcttattcgggtgatgaattggtggct
gtttatcggtattttcgtagtctggcagtggatagtcccttctcaactgcgagagaaaac
ttaattgttgcatttgaaaagaaccgtcatagttattctcaactctctggggatgctgtt
gcacgagggggcaaggattcccctgcaaaattgtctggcaaagctagagggaaaggggag
ggaaagcatgtatccaaagatacaaatgctgaaactaaacttgtcaaggaaggagtatct
agtagtcaagagagctataaatcattttgtgtccggtttgtacgtctaaatggcattctt
tttactcgcacaagcttggaaacttttgctgaagtgctctctttggtgagcggtggcttg
cgtaagtttctgtcatctggaccagaagaggagcttatttttggcgctgatgctgttgag
agtggacttattgtggttaggcttgtggccattcttatattcacagttcacaatgtgaat
agagaatctgagggccagacatatgcagaaattctacaacggaatctactcttaaagaat
gcatgcattgctgtttttgagttgatgagccacataatggaaagatgtgtgcagctgcac
gatccttcttcaagtttcctcttacctggcattctagtttttgctgaatggttagcttgc
tgtccagatgttgcagctggtaatgacgtggacgagaaacatggtgctgttagatcaaaa
ttttggaacctctttatttcatttttgaataagctcatgtcatctggttcagtttccata
gatgatgacgaagatgagacttgctttaataacatgagtaagtatgaagagggaaataca
gaaaaccggttggctttgtgggaggactttgagttgagaggttatgtgccacttattcct
gctcaaacccttttagatttttccagaaaacattcgtttggaagtgatggtcagaaggaa
aaaaaggcccgtgtgaaaaggacctttgcagcaggcaaggctcttgctggcattgtcagg
gttgataaaaaagcgatcagtttcgattcaaggataaagaagtttgttattggtgctgat
cctgaaatgttggataacatggcacatgcattttcaggcattccgaataaagataatcca
ggacaagaaaatcaagctgctgacaaagcaacaaatatggcaattgcacagacaaatcgg
cagcttcttatagaaggagatgaggaggatgaagtgattgtcttcaagccaatagtggct
gagaagcgatctgaagctgttgattctaattgggcagcaacctatgagggtctgaagcct
agtcagaatgcttctgcaggtgatatggccttcagtggcagctccatttcagctcctcct
gttccccagcattttcaaccagttcaaccttatgtatcaaaatggatgatgggagaagaa
gcctttcttgctaacagcttaaatggtttgaggttcacggggaatgggcatttagtaaaa
tctgaaattcaagaaaatcatcctcctatgccttcagttccagttcaacagtctttcaat
gtttctaatggtggtgctttttacaatcacacaaaagcagctccagatactttcgtccca
tccatgcatgatgtcattgcatcttctggagcaatcgcaaatagttttgctgtaaagaca
tctgctacatccactggttcacgaaaaaatcctgtaagtcgtccgagcagacaccttggc
ccccctcccggttttagccgtgttcttcctaaacaagtaaatgaatctgtttctggttct
gatctggcaagtgaaagccccatgctggatgattatagttggttggatggatatcaggtg
cccttgtccacaaaaagttctggcctcaataattcaattaattatccatcacattcaaac
ccacattctgtctctattggcaatggcttgcctggaactatgaacttcccattccctggg
aagcaggttccaaccatgccattccaatcagataagcaaaatgggtggcaagattactca
atgcttgacagtcttaaattacaacatgaacagcagctgcagttacagcaacagcaagcc
actaatgggaatcagcacttcaatccaccgcccgagcaatatcaaggacagtctggctgg
actggtcgttactttgtgtga
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