Humulus lupulus (common hop): 133790459
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Entry
133790459 CDS
T11341
Name
(RefSeq) exosome complex component RRP45A isoform X1
KO
K03678
exosome complex component RRP45
Organism
hlp Humulus lupulus (common hop)
Pathway
hlp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hlp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133790459
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hlp03019
]
133790459
Messenger RNA biogenesis [BR:
hlp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
133790459
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
133790459
NCBI-ProteinID:
XP_062084090
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All DBs
Position
7:5735541..5739646
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AA seq
449 aa
AA seq
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MEQRLANTWRLTVNEKKFIENALLSDLRVDGRRPFDFRNVIITFGKEDGSAEVQLGQTHV
MGFVTGRLVQPYRDRSNEGTLSIFTEFSPMADPSFEPGRPSEAAIELGRIIDRGLRESRA
VDTESLCVLPGKLVWAIRIDLHILDNGGNLVDTANIAALAALMTFRRPECSLGGDDGQEV
IVHPPEERDPLPLIIHHLPIAVTFAFIGSESSVVIDPTHQEEAVMGGRMTTTLNANGDIC
AIQKAGGEGVLQSVIMQCLRIASVKAGDITEKIKKAVDSFNTQRTLKKIKRHPASTVMDI
DGADFKLREKQSPVVDKKATIIPSQSENVEGGTKSIEQGQTKKGNEGVKNFIGGPSSWDP
YSKGVDPEFLKASLASRGTSTANKKQEESKKENTLSEAKLEEPPKAVNQGSLAVESVQSE
QQSKGEKTLKDAVKPKHKRKKKQSFTGAS
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atggagcaacgactggccaacacatggcgtctcacagtcaatgagaaaaaatttattgaa
aacgctcttctctctgacctccgagttgatggtcgccgtccatttgacttccgcaatgtc
atcattaccttcggcaaggaggatggctcggcagaggtgcagctgggccaaacccatgtc
atgggatttgtgacgggtcggctagttcagccctatcgtgaccgctccaacgagggcaca
ctttccatcttcactgagttctcccccatggccgatccttccttcgagcctggccgcccc
agcgaggctgctatcgagctcggccgcattatagaccgtggcctaagagaaagcagggct
gttgacactgaatcgctctgcgttcttccagggaaattggtttgggccatccgtattgac
cttcatattctagataatggaggaaaccttgtggatactgcaaatattgctgctttggct
gctctcatgacatttcggaggcctgaatgctcattaggaggagacgatggtcaagaagtg
attgtacatccacctgaggaaagagacccattacctctgataatacatcatcttcctata
gcagtaacctttgcattcattggtagtgaaagtagtgtggtaatagatccaactcatcaa
gaagaggctgttatgggaggacgaatgacaaccacacttaatgcaaatggtgatatttgt
gctattcaaaaagctggaggggaaggggtcttgcaaagtgttatcatgcagtgtttgcga
attgcgtctgtgaaagctggtgatataacagagaagataaagaaggcagttgattcattt
aacacacagagaacattaaagaagatcaaacgccatcctgcctctactgttatggatatt
gatggagctgattttaaattaagggaaaaacaaagcccggtagttgataagaaagctacc
atcattcccagtcaatctgaaaatgttgaagggggaactaaatcaatagaacaaggacaa
actaagaagggaaatgaaggtgtgaagaatttcattgggggcccctcatcttgggatcct
tactcgaagggtgtcgatccagaattcttaaaagcatctcttgcatcacgaggaacgtca
acagctaataagaaacaagaggaatcgaaaaaagagaataccttatctgaagccaagctg
gaggaacctcctaaagctgttaatcaaggatctttagctgttgagtcagttcaatctgaa
cagcaatctaaaggagaaaaaactttgaaggatgcagtgaagcccaagcacaagagaaaa
aagaaacaatctttcactggtgcaagctag
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