Humulus lupulus (common hop): 133791007
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Entry
133791007 CDS
T11341
Name
(RefSeq) zinc finger CCCH domain-containing protein 40-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
hlp Humulus lupulus (common hop)
Pathway
hlp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hlp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133791007
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hlp03041
]
133791007
Spliceosome [BR:
hlp03041
]
Complex B
Other components
Prp19-related factors
133791007
Complex C
133791007
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_12
zf-CCCH_3
RRM_YTH1
zf-CCCH
RRM_occluded
zf-CCCH_4
RRM_3
zf-CCCH_10
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
133791007
NCBI-ProteinID:
XP_062084871
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All DBs
Position
7:complement(26353446..26357679)
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AA seq
491 aa
AA seq
DB search
MAHRLLRDVEADGWERSDFPIICESCLGDNPYVRMTKANYDKECKICTRPFTVFRWRPGR
DARFKKTEICQTCSKVKNVCQVCLLDLEYGLPVQVRDTALSINSNEAIPKSDVNREFFAE
EHDRKARAGLDYESSYGKVRPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGAECPYR
HEMPITGELSQQNIKDRYYGVNDPVAHKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVT
EQDLRDNFYAHGEIESVRMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGR
PQAPKPDSDASDEARQQAAVAHSGLLPRAVISQQQFQSPDQSAPIYYNIPPPSQPERNFY
PSMDPQRMGAIVSSQEGAPSGSSGSGENKSQDKQQQGQHFAYHPRPPQHGQYHQQYYPPH
GFMHPPPPPPPPPGPPPPYQQYPAPHHSAMPPRQPPPVNQQYQHSAPAGSVASGSNPPGS
TGSAAPTSSSS
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atggcacacaggttgcttcgagatgtagaggctgacggttgggaacgatcggacttccct
ataatctgcgagtcatgtctcggtgacaatccttacgttcggatgacaaaagcaaattat
gacaaggagtgcaagatctgtacacgaccattcacagttttcagatggagaccaggcagg
gatgcaagattcaagaaaacagagatttgccagacgtgcagtaaagtgaaaaatgtttgt
caagtttgccttttggatttggaatatggtttaccagtccaagttcgagatactgctctt
tctattaattcaaatgaggccattccgaagagtgatgtaaatagagagttttttgctgaa
gagcatgatcgcaaggctagagctggtttagattatgaatcttcatatggaaaggtgcgg
ccaaatgacaccattttgaagcttcaaagaacaacaccttattacaagaggaatcgagcc
catgtctgcagtttctacattcgtggtgaatgcacaaggggtgctgagtgtccttacagg
cacgagatgccgataactggggagctgtcgcagcaaaatataaaagatcgatactacgga
gtcaatgatcctgtagcacacaagcttctcaacaaggctggagagatgccgtctttggaa
ccgccagaggatgagagcatcagaacgctttatgtgggtgggcttgatgcaagagttact
gagcaggatttaagagataacttttatgctcatggggagattgaatccgttcggatggta
ctacagcgagcatgtgcctttgtgacctacacaactagagaaggtgcagagaaagctgca
gaagagctctctaacaaactggtaattaagggtttgagattgaagcttatgtggggtaga
ccacaagcacccaaacctgatagtgatgcctctgacgaagcaagacagcaggctgcagta
gctcacagtgggttattacctcgagctgtcatatctcaacagcaatttcaatctccagac
caatctgcaccaatatactacaacatccctcccccttctcagccagagagaaacttttat
ccatcaatggatcctcagagaatgggtgccattgtttcctctcaagagggtgctcctagt
ggatcctcagggtcaggtgaaaacaaatcacaagacaagcagcaacaggggcagcatttt
gcttaccatcctaggcctccacaacatggccaatatcatcaacaatattacccaccacat
gggtttatgcatccaccaccaccaccaccaccaccaccgggtccaccaccaccttatcag
cagtaccctgcacctcatcattctgcaatgccacctcgacaaccccctccggtaaaccag
cagtatcagcattctgctccagcaggatctgtagcgtcgggttccaaccctccagggtca
acaggatctgctgcccctacatcatcatcgtcatag
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integrated database retrieval system
