Humulus lupulus (common hop): 133791202
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Entry
133791202 CDS
T11341
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11 isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
hlp Humulus lupulus (common hop)
Pathway
hlp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hlp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133791202
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hlp03019
]
133791202
Enzymes [BR:
hlp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133791202
Messenger RNA biogenesis [BR:
hlp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
133791202
mRNA degradation factors
3'-5' decay
Ski complex
133791202
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Ski2_N
Helicase_C
DEXQc_Suv3
AAA_22
Motif
Other DBs
NCBI-GeneID:
133791202
NCBI-ProteinID:
XP_062085109
LinkDB
All DBs
Position
7:complement(39334342..39356578)
Genome browser
AA seq
1354 aa
AA seq
DB search
MDPIKAANELNYRVGFSGHSGHLRLEPLSTVERSNPVKSLPDFILPPAFPKETPESIKSY
VEEKYLLPRLDSELFSPEKAGRQWDFDWFDRAKIQLEPSLPRKVIIPTWELPFRRPKQGR
WEPGSLQVDVSELTVEAQESGSLPRMNGTAKDFLRGSINNRPFRPGGLDDSQSLERVLPD
GASNGEWVRELLNGGPSQTIPPGFKQGLELGELKAYPCAWNVNKDQTLIKNTEENQTELS
VQFDDLFKKAWEEDITEFVEDGMESVNSEGEAESVKSDAEAESAKPKAEAERDMPSNASD
TELSALDEILSIKAEELTTILDNRGAGGEHQKEAWASSGGSEWISQHFHELVPDMALDFP
FELDTFQKEAIYYLENGESVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKTISNQ
KYRDFCGKFDVGLLTGDVSLKPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVN
DVERGVVWEEVIIMLPRHINIVLLSATVPNTVEFADWIGRTKQKQIRVTGTTKRPVPLEH
CIFHSGELYKICESETFMPQGLQAAKDTLKRKNMTSSSTGPSGSHSGGSAAFSQKRESVT
RGKQNKHFGSHSSGNYYGSGGGSQNNGNGYNSWGLRRSDASLCLSLINKLSKNSLLPVVI
FCFSKNRCDKSADSMTGTDLTSSSEKSEIRIFCDKAFSRLKGSDRTLPQVVRVQNLLHRG
IGVHHAGLLPIVKEVVEMLFCRCVIKVLFSTETFAMGVNAPARTVVFDTLRKFDGKEFRT
LLPGEYTQMAGRAGRRGLDKIGTVAVLCRDEIPEEKDLKPVIVGSATKLESQFRLTYIMI
LHLLRVEELKVEDMLKRSFAEFHAQKKLPEQQQLLMRKLAQPTKAIECIKGEPAIEEYYE
MYSEAESYDKKISEAVMQHTTAQSLLTPGRVVVMKSQSAQDHLLGVVIKAPSNNNKQHIV
LVLRPDLPFITPLASGDLKDTKSGNFSEGYYMVPKSKRAQEEEYYSSATSRKGSGAIKIK
LPYSGVAAGMGYEVRAVDINEFLCLCNSKIKIDQARLLEDASTVAYSKTIQELLGKKSDG
KYPPPLDPVKDLKLKDMDLVESYYKWTNLLQKMSKNKCHGCIKLQEHIKLAREIKKHKEE
VDALKYEMSDEALQQMPDFQGRIDVLKEIGCIDADLVVQIKGRVACEMNSGEELICTECL
FENQLDDLEPEEAVALMSAFVFQQKNASDPSLTPKLSQAKQRLYDTAIRLGKLQAGFELQ
INPEEYARENLKFGLVEVVYEWAKGTPFADICELTDVPEGMIVRTIVRLDETCREFKNAA
SIMGNSALYKKMEAASNAIKRDIVFAASLYVTGV
NT seq
4065 nt
NT seq
+upstream
nt +downstream
nt
atggacccgattaaagcagcgaacgaactaaattatcgggtcgggttctccggccacagt
ggtcacctcaggctcgagcctctctctactgtggagcgttctaaccccgtcaagtcgctc
cccgatttcatattgccacctgcatttcccaaggaaacacctgaatcaataaaatcttat
gtagaagagaagtatctcttgccgaggctggactctgaattattttcaccggaaaaggct
ggaaggcagtgggattttgactggtttgacagggcaaaaatacagttggagccatcattg
ccgcgcaaggttataattcccacatgggaattaccctttagacgtccaaagcaaggaaga
tgggaaccaggctctctgcaggtggatgtatcagagttaacagtagaagctcaagaatct
ggttcattgccccgcatgaatggtactgcgaaggattttctaagaggaagcattaataac
cgcccttttcgtccaggtggtttggatgattcccaatccttagaaagggttctacctgat
ggtgcttccaatggtgaatgggttcgtgaacttcttaatggtggcccttctcagactatt
cctccgggctttaagcaaggattagaacttggtgaacttaaggcttatccttgtgcatgg
aatgttaacaaggatcaaactttgataaagaatacagaagaaaaccagactgaattatct
gtacagtttgacgacttattcaaaaaggcttgggaagaggatatcactgaatttgtagaa
gatggaatggagtctgttaattctgaaggtgaagcagagtctgtaaagtctgatgctgaa
gcagagtctgctaagcccaaagccgaagcagaaagggatatgcctagcaacgcttctgat
actgaattatctgcactggatgagattttatcaatcaaagcagaagaattaacaacaata
ttggacaatcgcggggctggtggagagcaccagaaagaggcctgggctagtagtggaggc
agtgaatggatttcacagcattttcatgagcttgttcctgacatggcacttgattttcct
tttgaattggatacattccagaaagaggctatctattatcttgaaaatggggagtctgtg
tttgtagctgctcatacgtcagcgggaaagacagttgttgcagagtatgcatttgctttg
gcatcaaaacattgtactagagctgtctatactgctccaattaaaaccataagcaatcaa
aagtatagggatttctgcggaaaattcgatgttggacttctaacaggtgatgttagcctg
aagcctgaagcttcttgtcttattatgaccacagaaatattaaggtcaatgctgtaccgt
ggtgctgatattatccgtgacattgaatgggttatatttgacgaggtgcactacgtcaat
gatgttgaaaggggtgttgtttgggaagaagttatcatcatgcttccgagacatattaac
attgttcttctttcagcaacggtaccaaacactgttgagtttgcagactggattggacgg
acaaagcaaaagcaaattcgtgttactgggacaacaaaaagaccagtccctttggaacac
tgcatatttcactctggagaactttacaagatatgtgagagtgaaacttttatgcctcag
ggactgcaagctgctaaggatacattgaagagaaaaaatatgactagcagcagtactggt
ccttctggatcacacagtggaggttcagcagctttttctcagaaacgtgaaagtgttact
cggggaaaacagaacaaacattttggttctcacagttctggaaactactatggtagtggt
ggtgggagtcaaaataatggcaatggctacaacagttggggtttaagaagatcagatgct
tctttgtgtttgtcacttatcaataagctctcaaagaactctctgttacctgtggttata
ttctgtttctcaaaaaacagatgtgataaatcggccgatagtatgactggaactgatctc
accagtagttctgagaaaagcgagattcgtattttctgcgacaaagcattttcacgtctc
aagggatcagacaggacattgccacaggttgtcagagttcaaaatcttcttcacagaggc
attggtgtgcatcatgcagggctgctgccaattgtcaaggaagttgttgaaatgcttttt
tgccgttgtgtgatcaaggttttgttttcaactgagacatttgcaatgggagtaaatgcc
ccagcaagaacagttgtttttgatacattaaggaaatttgatggcaaagagtttagaaca
ttactacctggggagtacactcaaatggcaggtcgagcagggagaagaggtcttgataaa
attggtactgttgccgtactgtgccgtgatgaaatcccagaagagaaggatttaaaacct
gttatagttggaagtgcaactaagctggagtctcagtttcggctgacttatattatgatc
ctacatctccttcgtgttgaagaattgaaggtagaagacatgttaaaaagaagttttgct
gaatttcatgctcagaagaaactaccagaacagcaacaacttctaatgcgaaagcttgct
cagcctaccaaagcaatagaatgcataaaaggtgaaccagccattgaggaatattatgag
atgtactcagaagctgagagttatgacaaaaaaatatcagaggctgtcatgcaacatacc
actgcccagagtttacttactcctggaagagtggtagtcatgaaatcacaatcagctcag
gatcacttgcttggagttgtcataaaagcaccttccaataacaataaacaacacattgtt
ttagttctgagacctgacttgccatttattactcccttggccagtggtgatttaaaagat
acaaaaagtggtaatttctccgagggttattatatggtgccaaaatcaaaacgtgctcag
gaagaagagtattattcttctgccacatctcgcaaaggatccggtgctattaaaataaag
ctaccgtacagtggtgttgcagctggtatgggttatgaggtacgagctgttgatatcaat
gagtttttatgcctatgtaatagcaaaataaagattgatcaggctcggcttcttgaagat
gctagcactgttgcttactccaagacaattcaagagctgttgggtaaaaaatctgatgga
aaatatcctccaccattagatccagtgaaagatttgaagttgaaagacatggatcttgtc
gaatcatattacaagtggacaaatctgctgcaaaagatgtcaaagaacaagtgtcatggg
tgtataaaattgcaggagcacattaagctagcaagagagataaagaaacacaaggaggaa
gttgatgcacttaagtatgagatgtcagatgaagcacttcaacaaatgccagatttccag
ggccggatagatgtactgaaggaaattggctgtattgatgctgaccttgtagttcaaata
aaaggtcgcgttgcatgtgagatgaattcgggggaggagttaatatgtacagagtgttta
tttgagaatcaattggatgacctcgaaccagaagaagcagtggcattaatgtcagccttt
gtttttcagcagaagaatgcatccgacccttctctcactcccaagctgtctcaggccaaa
caaagattgtacgatacagctatacgacttggtaagctccaagctgggtttgaacttcag
ataaatcctgaagagtatgccagagagaatctcaaatttggtcttgtggaagtggtttac
gaatgggcaaagggcactccctttgcagacatatgcgaacttacagatgttcctgaaggt
atgattgtgcggaccattgtcagactggatgagacgtgtcgtgagttcaaaaatgccgca
tccattatgggtaattctgcactctacaaaaaaatggaagctgcttcgaacgccataaaa
cgcgacattgtttttgcagctagcttgtatgtcactggagtctaa
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